Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007217.1 Kokia drynarioides strain JFW-HI SEQ_121832, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5202
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.34


Found at i:1451 original size:20 final size:21

Alignment explanation


    Indices: 1426--1465  Score: 64
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1416 GAAAGAAAAT

                       *         
       1426 ATAATTT-AACTAATTTTTCA
          1 ATAATTTCAACAAATTTTTCA

                                
       1446 ATAATTTCAACAAATTTTTC
          1 ATAATTTCAACAAATTTTTC

       1466 TCTTAGTATA


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  20    7  0.39
  21   11  0.61

ACGTcount: A:0.40, C:0.12, G:0.00, T:0.47


Consensus pattern (21 bp):   
ATAATTTCAACAAATTTTTCA

Found at i:4780 original size:24 final size:24

Alignment explanation


    Indices: 4752--4800  Score: 89
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       4742 AATATACCAG

                           *        
       4752 TAACAACATCAAGCGTGGTAGCAT
          1 TAACAACATCAAGCGCGGTAGCAT

                                    
       4776 TAACAACATCAAGCGCGGTAGCAT
          1 TAACAACATCAAGCGCGGTAGCAT

             
       4800 T
          1 T

       4801 CTCTCTTACT


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.37, C:0.22, G:0.20, T:0.20


Consensus pattern (24 bp):   
TAACAACATCAAGCGCGGTAGCAT
Done.