Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007223.1 Kokia drynarioides strain JFW-HI SEQ_121838, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2296
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28


Found at i:1337 original size:54 final size:54

Alignment explanation


    Indices: 1262--1371  Score: 220
    Period size: 54  Copynumber: 2.0  Consensus size: 54

       1252 AGTGTTTTAA

                                                                  
       1262 TTGTCTCTTTTGTATCTCATTTAGCATGCATCATGAGCATTTCATACTTAGTTT
          1 TTGTCTCTTTTGTATCTCATTTAGCATGCATCATGAGCATTTCATACTTAGTTT

                                                                  
       1316 TTGTCTCTTTTGTATCTCATTTAGCATGCATCATGAGCATTTCATACTTAGTTT
          1 TTGTCTCTTTTGTATCTCATTTAGCATGCATCATGAGCATTTCATACTTAGTTT

              
       1370 TT
          1 TT

       1372 ATATTTTTCA


Statistics
Matches: 56,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  54   56  1.00

ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49


Consensus pattern (54 bp):   
TTGTCTCTTTTGTATCTCATTTAGCATGCATCATGAGCATTTCATACTTAGTTT
Done.