Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007236.1 Kokia drynarioides strain JFW-HI SEQ_121851, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10380
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.33


Found at i:4508 original size:43 final size:43

Alignment explanation


    Indices: 4447--4532  Score: 145
    Period size: 43  Copynumber: 2.0  Consensus size: 43

       4437 GGCTACCAAA

                    *              *                   
       4447 TTAAACATTAATATTTTCTTTAACTTTTATTATATATCATATT
          1 TTAAACATAAATATTTTCTTTAAATTTTATTATATATCATATT

                  *                                    
       4490 TTAAACCTAAATATTTTCTTTAAATTTTATTATATATCATATT
          1 TTAAACATAAATATTTTCTTTAAATTTTATTATATATCATATT

       4533 GGTATGTATA


Statistics
Matches: 40,  Mismatches: 3, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  43   40  1.00

ACGTcount: A:0.36, C:0.09, G:0.00, T:0.55


Consensus pattern (43 bp):   
TTAAACATAAATATTTTCTTTAAATTTTATTATATATCATATT

Found at i:8254 original size:18 final size:19

Alignment explanation


    Indices: 8214--8260  Score: 51
    Period size: 18  Copynumber: 2.5  Consensus size: 19

       8204 TTTCCCGATA

                           *   
       8214 ATTTCAATATCCATCTAGC
          1 ATTTCAATATCCATCAAGC

                        *     *
       8233 ATTTCAA-ATCCTTCAAGG
          1 ATTTCAATATCCATCAAGC

                *     
       8251 ATTTTAATAT
          1 ATTTCAATAT

       8261 AAACTTTACT


Statistics
Matches: 23,  Mismatches: 4, Indels: 2
        0.79            0.14        0.07

Matches are distributed among these distances:
  18   14  0.61
  19    9  0.39

ACGTcount: A:0.34, C:0.19, G:0.06, T:0.40


Consensus pattern (19 bp):   
ATTTCAATATCCATCAAGC
Done.