Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007237.1 Kokia drynarioides strain JFW-HI SEQ_121852, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3421
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29


Found at i:2551 original size:23 final size:23

Alignment explanation


    Indices: 2525--2722  Score: 272
    Period size: 23  Copynumber: 8.6  Consensus size: 23

       2515 ATACGTTTTA

                             *    *
       2525 ACATTAATATTTAAGCACAAATT
          1 ACATTAATATTTAAGCATAAATC

                                   
       2548 ACATTAATATTTAAGCATAAATC
          1 ACATTAATATTTAAGCATAAATC

                      *   *        
       2571 ACATTAATATGTAAACATAAATC
          1 ACATTAATATTTAAGCATAAATC

             *     *              *
       2594 ATATTAACATTTAAGCATAAATT
          1 ACATTAATATTTAAGCATAAATC

                             *     
       2617 ACATTAATATTTAAGCACAAATC
          1 ACATTAATATTTAAGCATAAATC

                                   
       2640 ACATTAATATTTAAGCATAAATC
          1 ACATTAATATTTAAGCATAAATC

                       *            
       2663 ACATTAACT-TGTAAGCATAAATC
          1 ACATTAA-TATTTAAGCATAAATC

             *     *             * 
       2686 ATATTAACATTTAAGCATAAAAC
          1 ACATTAATATTTAAGCATAAATC

                          
       2709 ACATTAATATTTAA
          1 ACATTAATATTTAA

       2723 CACATTTAAT


Statistics
Matches: 152,  Mismatches: 21, Indels: 4
        0.86            0.12        0.02

Matches are distributed among these distances:
  23  151  0.99
  24    1  0.01

ACGTcount: A:0.48, C:0.13, G:0.05, T:0.34


Consensus pattern (23 bp):   
ACATTAATATTTAAGCATAAATC

Found at i:2910 original size:66 final size:66

Alignment explanation


    Indices: 2799--2935  Score: 165
    Period size: 66  Copynumber: 2.1  Consensus size: 66

       2789 AATATGCGAA

                                                    *                        
       2799 TCTCCAAACACACCAAATATGACTCAGAGTCGAACATATCTCAAAAGTGAAGCATATAA-CTAAC
          1 TCTCCAAACACACCAAATATGACTCAGAGTCGAACATATCCCAAAAGTGAAGCATA-AAGCTAAC

              
       2863 AC
         65 AC

                                      *             *               *        
       2865 TCTCCAAACACACCAAA-A-GACTTATAGAGTC-AAGCATGTCCCAAAAGTGAAGCGTAAAGCTA
          1 TCTCCAAACACACCAAATATGAC-T-CAGAGTCGAA-CATATCCCAAAAGTGAAGCATAAAGCTA

              * 
       2927 ACTC
         63 ACAC

                 
       2931 TCTCC
          1 TCTCC

       2936 TTATTTCCCC


Statistics
Matches: 62,  Mismatches: 5, Indels: 8
        0.83            0.07        0.11

Matches are distributed among these distances:
  64    3  0.05
  65    6  0.10
  66   53  0.85

ACGTcount: A:0.41, C:0.27, G:0.12, T:0.20


Consensus pattern (66 bp):   
TCTCCAAACACACCAAATATGACTCAGAGTCGAACATATCCCAAAAGTGAAGCATAAAGCTAACA
C
Done.