Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007239.1 Kokia drynarioides strain JFW-HI SEQ_121854, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5183
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.32


Found at i:529 original size:18 final size:17

Alignment explanation


    Indices: 486--534  Score: 62
    Period size: 18  Copynumber: 2.7  Consensus size: 17

        476 CTACAATATC

                 *           
        486 TTAAAATATAAAAAAAA
          1 TTAAACTATAAAAAAAA

                                
        503 TTAATAACTATAAAATAAAA
          1 TT-A-AACTATAAAA-AAAA

                        
        523 TTAAACTATAAA
          1 TTAAACTATAAA

        535 CTTTAAAACA


Statistics
Matches: 28,  Mismatches: 1, Indels: 5
        0.82            0.03        0.15

Matches are distributed among these distances:
  17    2  0.07
  18   10  0.36
  19   10  0.36
  20    6  0.21

ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29


Consensus pattern (17 bp):   
TTAAACTATAAAAAAAA
Done.