Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007240.1 Kokia drynarioides strain JFW-HI SEQ_121855, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6917
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37


Found at i:3915 original size:29 final size:29

Alignment explanation


    Indices: 3868--3925  Score: 80
    Period size: 29  Copynumber: 2.0  Consensus size: 29

       3858 TTTGATTCTT

                      *  **              
       3868 TTTAATAATATAAGGACTAAATTAATCCA
          1 TTTAATAATAGAAAAACTAAATTAATCCA

                                *        
       3897 TTTAATAATAGAAAAACTAATTTAATCCA
          1 TTTAATAATAGAAAAACTAAATTAATCCA

       3926 ATCCTCATAA


Statistics
Matches: 25,  Mismatches: 4, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  29   25  1.00

ACGTcount: A:0.50, C:0.10, G:0.05, T:0.34


Consensus pattern (29 bp):   
TTTAATAATAGAAAAACTAAATTAATCCA

Found at i:5131 original size:15 final size:14

Alignment explanation


    Indices: 5077--5137  Score: 59
    Period size: 15  Copynumber: 4.1  Consensus size: 14

       5067 AATCCTATTT

                     *     
       5077 ATTTTAGTTATTAAA
          1 ATTTTA-TTTTTAAA

                           *
       5092 ATTAATTATTTTTAAG
          1 ATT--TTATTTTTAAA

                *          
       5108 ATTTAATTTTATAAA
          1 ATTTTATTTT-TAAA

                          
       5123 ATTTTATTTTTAAA
          1 ATTTTATTTTTAAA

             
       5137 A
          1 A

       5138 AACTTTCACA


Statistics
Matches: 38,  Mismatches: 5, Indels: 7
        0.76            0.10        0.14

Matches are distributed among these distances:
  14   11  0.29
  15   15  0.39
  16    9  0.24
  17    3  0.08

ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56


Consensus pattern (14 bp):   
ATTTTATTTTTAAA
Done.