Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007250.1 Kokia drynarioides strain JFW-HI SEQ_121866, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2925
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29


Found at i:1492 original size:17 final size:18

Alignment explanation


    Indices: 1461--1496  Score: 65
    Period size: 17  Copynumber: 2.1  Consensus size: 18

       1451 AATTTAGTTT

                              
       1461 TCATTGCATTTTTATTTG
          1 TCATTGCATTTTTATTTG

                              
       1479 TCATTGCA-TTTTATTTG
          1 TCATTGCATTTTTATTTG

             
       1496 T
          1 T

       1497 TAGCGCATTT


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  17   10  0.56
  18    8  0.44

ACGTcount: A:0.17, C:0.11, G:0.11, T:0.61


Consensus pattern (18 bp):   
TCATTGCATTTTTATTTG
Done.