Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007251.1 Kokia drynarioides strain JFW-HI SEQ_121867, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5235
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37


Found at i:2056 original size:20 final size:20

Alignment explanation


    Indices: 2031--2072  Score: 59
    Period size: 20  Copynumber: 2.1  Consensus size: 20

       2021 ATATTGAAGT

                                 
       2031 AACATTTAA-ATCATTCTTTA
          1 AACATTTAAGATC-TTCTTTA

                           *    
       2051 AACATTTAAGATCTTGTTTA
          1 AACATTTAAGATCTTCTTTA

              
       2071 AA
          1 AA

       2073 AGAACCAATC


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  20   17  0.85
  21    3  0.15

ACGTcount: A:0.40, C:0.12, G:0.05, T:0.43


Consensus pattern (20 bp):   
AACATTTAAGATCTTCTTTA
Done.