Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007253.1 Kokia drynarioides strain JFW-HI SEQ_121869, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2083
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.35


Found at i:1691 original size:36 final size:37

Alignment explanation


    Indices: 1644--1731  Score: 135
    Period size: 36  Copynumber: 2.4  Consensus size: 37

       1634 TAGCTCAAAA

                                                 
       1644 GACATGTCTCTTCATTTGCCTTTGAGTAGATGAAAG-
          1 GACATGTCTCTTCATTTGCCTTTGAGTAGATGAAAGT

                              **                 
       1680 GACATGTCTCTTCATTTGTTTTTGAGTAGATGAAAGT
          1 GACATGTCTCTTCATTTGCCTTTGAGTAGATGAAAGT

                     *      
       1717 G-CATGTCTTTTCATT
          1 GACATGTCTCTTCATT

       1732 AGTCATTGGA


Statistics
Matches: 48,  Mismatches: 3, Indels: 2
        0.91            0.06        0.04

Matches are distributed among these distances:
  36   47  0.98
  37    1  0.02

ACGTcount: A:0.23, C:0.15, G:0.20, T:0.42


Consensus pattern (37 bp):   
GACATGTCTCTTCATTTGCCTTTGAGTAGATGAAAGT
Done.