genome.fa.s7262.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01007262.1 Kokia drynarioides strain JFW-HI SEQ_121878, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  275109

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
798--845	3	15.7	3	95	4	87	33	2	0	64	1.05
2606--2774	48	3.5	48	87	3	241	32	24	30	12	1.92
13579--13660	42	2.0	42	95	0	146	21	20	18	39	1.93
17292--17324	18	1.9	17	88	11	50	27	9	9	54	1.62
25495--25532	19	2.0	19	90	10	60	60	18	5	15	1.53
27398--27440	22	2.0	23	90	9	72	46	4	6	41	1.51
27420--27560	61	2.4	59	80	13	155	32	13	12	41	1.81
27521--27685	61	2.7	61	72	15	137	29	16	12	41	1.85
27703--27754	16	3.1	16	79	15	68	65	3	0	30	1.10
28584--28768	59	3.1	60	80	10	182	38	17	17	26	1.91
39760--39797	15	2.4	17	86	8	53	34	5	0	60	1.19
40979--41019	9	4.8	9	76	11	50	24	0	0	75	0.80
45112--45472	180	2.0	180	97	0	677	28	12	18	41	1.86
48279--48316	17	2.3	17	90	4	60	26	5	0	68	1.11
48403--48477	29	2.6	29	74	8	80	49	2	2	45	1.30
50204--50258	27	2.0	27	100	0	110	36	3	18	41	1.68
52655--52684	2	15.0	2	92	0	51	0	46	0	53	1.00
85978--86064	12	7.8	12	66	14	51	65	0	0	34	0.93
101586--101646	28	2.2	28	77	19	65	36	3	8	52	1.48
107145--107182	19	2.0	19	100	0	76	47	15	15	21	1.82
111346--111401	19	2.9	19	84	10	78	58	0	0	41	0.98
113839--113864	2	13.0	2	100	0	52	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128873--128913	18	2.2	19	86	4	57	26	7	2	63	1.33
128982--129029	23	2.1	23	88	0	69	25	4	2	68	1.18
132372--132397	9	2.9	9	100	0	52	34	0	57	7	1.27
134779--134809	16	1.9	16	93	0	53	80	0	19	0	0.71
135063--135128	15	4.4	15	82	0	69	19	36	18	25	1.94
135063--135128	30	2.2	30	83	0	87	19	36	18	25	1.94
147054--147275	110	2.0	110	92	1	365	42	21	9	25	1.84
150419--150456	19	2.0	20	94	5	69	68	0	0	31	0.90
150419--150466	19	2.5	19	83	9	53	64	0	4	31	1.12
151201--151275	29	2.5	29	78	8	71	48	13	5	33	1.65
152615--152660	24	1.9	24	82	8	58	41	0	2	56	1.11
155771--155810	19	2.2	19	86	4	55	47	10	15	27	1.77
158483--158552	29	2.3	29	80	4	77	35	10	14	40	1.79
158504--158562	29	2.0	29	86	3	82	30	8	13	47	1.73
158687--158781	31	3.1	30	74	5	84	41	10	10	37	1.74
166345--166377	13	2.4	14	90	5	50	39	0	0	60	0.97
170169--170231	28	2.2	28	94	2	108	26	7	28	36	1.85
170169--170346	28	6.2	27	67	25	73	31	6	28	33	1.83
170216--170551	58	5.8	57	79	8	233	33	3	27	36	1.73
170360--170651	30	10.0	29	83	6	333	33	1	27	37	1.67
170304--170637	58	5.7	57	81	10	313	33	2	26	37	1.70
170360--170651	88	3.3	85	84	7	354	33	1	27	37	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
190561--191913	184	7.4	182	92	1	2249	31	17	15	35	1.91
190561--191913	366	3.7	365	96	0	2404	31	17	15	35	1.91
201390--201614	113	2.0	113	90	1	353	40	9	18	30	1.83
217390--217429	17	2.3	17	86	4	53	70	5	2	22	1.19
221025--221058	14	2.4	14	85	0	50	76	0	2	20	0.92
224029--224068	20	2.0	21	85	5	55	12	7	7	72	1.27
226993--227022	2	15.0	2	100	0	60	50	0	0	50	1.00
227804--227851	21	2.3	20	79	13	53	50	0	0	50	1.00
227954--227980	2	13.5	2	100	0	54	51	0	0	48	1.00
229631--229673	21	2.0	21	86	0	59	23	4	23	48	1.69
230330--230359	15	2.0	15	93	0	51	36	0	0	63	0.95
232990--233036	23	2.0	23	84	8	60	36	8	0	55	1.31
233485--233513	2	14.5	2	100	0	58	48	0	0	51	1.00
240562--240630	33	2.1	33	97	0	129	30	15	5	47	1.69
242699--242769	36	2.0	36	82	0	88	38	18	14	29	1.90
244226--244403	27	6.6	27	86	2	232	37	20	19	21	1.94
244214--244403	81	2.3	81	85	0	272	39	19	18	22	1.93
246416--246560	51	2.8	51	88	2	202	38	20	26	14	1.91
253120--253167	21	2.3	20	79	13	53	29	2	4	64	1.23
268440--268511	27	2.7	27	80	8	67	47	1	1	50	1.18
271595--271633	19	2.1	19	85	9	53	28	2	7	61	1.37
273287--273334	6	7.8	6	77	13	53	6	14	16	62	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
274946--274995	4	12.2	4	87	4	73	78	0	22	0	0.76
274938--274995	21	2.8	21	86	5	73	75	0	22	1	0.89
274997--275021	9	2.8	9	100	0	50	48	0	44	8	1.32

Tables:   1

The End!