Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007269.1 Kokia drynarioides strain JFW-HI SEQ_121885, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 882

Length: 1470
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.38


Found at i:1000 original size:30 final size:33

Alignment explanation


    Indices: 960--1029  Score: 101
    Period size: 30  Copynumber: 2.2  Consensus size: 33

        950 GGTCTATATC

                 *                           
        960 ATTATAATTTTTAAAGGATT-AAAT-TAATTA-
          1 ATTATTATTTTTAAAGGATTAAAATGTAATTAT

                             *               
        990 ATTATTATTTTTAAAGGGTTAAAATGTAATTAT
          1 ATTATTATTTTTAAAGGATTAAAATGTAATTAT

                   
       1023 ATTATTA
          1 ATTATTA

       1030 CTAATTAAAA


Statistics
Matches: 35,  Mismatches: 2, Indels: 3
        0.88            0.05        0.08

Matches are distributed among these distances:
  30   18  0.51
  31    4  0.11
  32    6  0.17
  33    7  0.20

ACGTcount: A:0.43, C:0.00, G:0.09, T:0.49


Consensus pattern (33 bp):   
ATTATTATTTTTAAAGGATTAAAATGTAATTAT

Done.