Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000727.1 Kokia drynarioides strain JFW-HI SEQ_111747, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2381
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39


Found at i:1701 original size:23 final size:23

Alignment explanation


    Indices: 1672--1744  Score: 92
    Period size: 23  Copynumber: 3.2  Consensus size: 23

       1662 TCATGCGTTA

                       *           
       1672 TATGCTTAAAGGTTAATGTGATT
          1 TATGCTTAAAGATTAATGTGATT

                      *            
       1695 TATGCTTAAATATTAATGTGATT
          1 TATGCTTAAAGATTAATGTGATT

               *      *    * *     
       1718 TATACTTAAATATTACTATGATT
          1 TATGCTTAAAGATTAATGTGATT

                
       1741 TATG
          1 TATG

       1745 TGTATTTATG


Statistics
Matches: 44,  Mismatches: 6, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  23   44  1.00

ACGTcount: A:0.34, C:0.05, G:0.14, T:0.47


Consensus pattern (23 bp):   
TATGCTTAAAGATTAATGTGATT
Done.