Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007271.1 Kokia drynarioides strain JFW-HI SEQ_121887, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 52867
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33

Warning! 4 characters in sequence are not A, C, G, or T


Found at i:38759 original size:21 final size:21

Alignment explanation


    Indices: 38739--38873  Score: 198
    Period size: 21  Copynumber: 6.4  Consensus size: 21

      38729 TTGGGTTCCA

                           *    *
      38739 TTTCTTCTTTTCCACCGTCCA
          1 TTTCTTCTTTTCCACTGTCCT

                              * *
      38760 TTTCTTCTTTTCCACTGTACA
          1 TTTCTTCTTTTCCACTGTCCT

                                 
      38781 TTTCTTCTTTTCCACTGTCCT
          1 TTTCTTCTTTTCCACTGTCCT

                          *      
      38802 TTTCTTCTTTTCCAATGTCCT
          1 TTTCTTCTTTTCCACTGTCCT

                                 
      38823 TTTCTTCTTTTCCACTGTCCT
          1 TTTCTTCTTTTCCACTGTCCT

                         * *  *  
      38844 TTTCTTCTTTTCCCCCGTTCT
          1 TTTCTTCTTTTCCACTGTCCT

                     
      38865 TTTCTTCTT
          1 TTTCTTCTT

      38874 CTTCTTTAGC


Statistics
Matches: 105,  Mismatches: 9, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  21  105  1.00

ACGTcount: A:0.07, C:0.33, G:0.04, T:0.56


Consensus pattern (21 bp):   
TTTCTTCTTTTCCACTGTCCT

Found at i:52597 original size:16 final size:16

Alignment explanation


    Indices: 52576--52609  Score: 50
    Period size: 16  Copynumber: 2.1  Consensus size: 16

      52566 CATACTCCCT

                        *   
      52576 TTAAATTTATTTTAAA
          1 TTAAATTTATTTAAAA

                    *       
      52592 TTAAATTTGTTTAAAA
          1 TTAAATTTATTTAAAA

              
      52608 TT
          1 TT

      52610 TTAAATTTAA


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56


Consensus pattern (16 bp):   
TTAAATTTATTTAAAA
Done.