Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007272.1 Kokia drynarioides strain JFW-HI SEQ_121888, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7146
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33


Found at i:6131 original size:117 final size:117

Alignment explanation


    Indices: 5916--6154  Score: 354
    Period size: 117  Copynumber: 2.0  Consensus size: 117

       5906 AACAGTTGTC

                                          *  *                               
       5916 CGAAAAGGAACATAAATATGACAAGACAACGGCGGCTCTTCAAGAACTCGTCGATGGCCTTGTAG
          1 CGAAAAGGAACATAAATATGACAAGACAACCGCAGCTCTTCAAGAACTCGTCGATGGCCTTGTAG

            *                      *    *                *      
       5981 CGAAAATTGACTCCAAGGACAGTGGTTTGCGGGATTGGGAGCTTCGATATAA
         66 AGAAAATTGACTCCAAGGACAGTAGTTTACGGGATTGGGAGCTTCAATATAA

            *    *               **         *                   *            
       6033 GGAAATGGAACATAAATATGATGAGACAACCGTAGCTCTTCAA-AGACTCGTTGATGGCCTTGTA
          1 CGAAAAGGAACATAAATATGACAAGACAACCGCAGCTCTTCAAGA-ACTCGTCGATGGCCTTGTA

                                                                 
       6097 GAGAAAATTGACTCCAAGGACAGTAGTTTACGGGATTGGGAGCTTCAATATAA
         65 GAGAAAATTGACTCCAAGGACAGTAGTTTACGGGATTGGGAGCTTCAATATAA

                 
       6150 CGAAA
          1 CGAAA

       6155 CCGTGAGACA


Statistics
Matches: 108,  Mismatches: 13, Indels: 2
        0.88            0.11        0.02

Matches are distributed among these distances:
 116    1  0.01
 117  107  0.99

ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23


Consensus pattern (117 bp):   
CGAAAAGGAACATAAATATGACAAGACAACCGCAGCTCTTCAAGAACTCGTCGATGGCCTTGTAG
AGAAAATTGACTCCAAGGACAGTAGTTTACGGGATTGGGAGCTTCAATATAA
Done.