Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007288.1 Kokia drynarioides strain JFW-HI SEQ_121904, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10576
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32


Found at i:6504 original size:21 final size:21

Alignment explanation


    Indices: 6480--6519  Score: 64
    Period size: 21  Copynumber: 1.9  Consensus size: 21

       6470 AAGTGAAAAG

                                  
       6480 AACA-AAAAGAAAATGAGTACA
          1 AACACAAAAGAAAA-GAGTACA

                               
       6501 AACACAAAAGAAAAGAGTA
          1 AACACAAAAGAAAAGAGTA

       6520 AGAAAAATGT


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  21    9  0.50
  22    9  0.50

ACGTcount: A:0.68, C:0.10, G:0.15, T:0.07


Consensus pattern (21 bp):   
AACACAAAAGAAAAGAGTACA

Found at i:10368 original size:26 final size:26

Alignment explanation


    Indices: 10338--10478  Score: 151
    Period size: 26  Copynumber: 5.4  Consensus size: 26

      10328 AATAAGTGAA

                 *                    
      10338 TCGAGTCGGTGAATAAATAGCAGGCT
          1 TCGAGCCGGTGAATAAATAGCAGGCT

                  *        *           
      10364 TCGAGCTGGTGAATATATAGCAGGCCT
          1 TCGAGCCGGTGAATAAATAGCAGG-CT

                                  *   
      10391 T-GAGCCGGTGAATAAATAGCAAGCT
          1 TCGAGCCGGTGAATAAATAGCAGGCT

                    *                 
      10416 TCGAGCCGATGAATAAATAGCAGGCT
          1 TCGAGCCGGTGAATAAATAGCAGGCT

              *  ***    *  *          
      10442 TCAAGATAGTGATTATATAGCAGGCT
          1 TCGAGCCGGTGAATAAATAGCAGGCT

                        
      10468 TCGTA-CCGGTG
          1 TCG-AGCCGGTG

      10479 TTTGGTTGAC


Statistics
Matches: 93,  Mismatches: 19, Indels: 6
        0.79            0.16        0.05

Matches are distributed among these distances:
  25    3  0.03
  26   86  0.92
  27    4  0.04

ACGTcount: A:0.30, C:0.17, G:0.28, T:0.24


Consensus pattern (26 bp):   
TCGAGCCGGTGAATAAATAGCAGGCT
Done.