Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007289.1 Kokia drynarioides strain JFW-HI SEQ_121905, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14530
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.35


Found at i:830 original size:21 final size:21

Alignment explanation


    Indices: 791--830  Score: 64
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        781 ACATTTTTCT

                                 
        791 TACTCTTTTCTTTTGTGTTTG
          1 TACTCTTTTCTTTTGTGTTTG

                                
        812 TACTCATTTTCTTTT-TGTT
          1 TACTC-TTTTCTTTTGTGTT

        831 CTTTTCACTT


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  21    9  0.50
  22    9  0.50

ACGTcount: A:0.07, C:0.15, G:0.10, T:0.68


Consensus pattern (21 bp):   
TACTCTTTTCTTTTGTGTTTG
Done.