Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007290.1 Kokia drynarioides strain JFW-HI SEQ_121906, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3807
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29


Found at i:3324 original size:63 final size:63

Alignment explanation


    Indices: 3225--3350  Score: 243
    Period size: 63  Copynumber: 2.0  Consensus size: 63

       3215 AAAAAGAAAA

                   *                                                       
       3225 AGGAGAGTTCGAGGTCGAGGTGAAAACCCGTAAAGGGCACTTTGAAACATAAGGAGATTTGAG
          1 AGGAGAGGTCGAGGTCGAGGTGAAAACCCGTAAAGGGCACTTTGAAACATAAGGAGATTTGAG

                                                                           
       3288 AGGAGAGGTCGAGGTCGAGGTGAAAACCCGTAAAGGGCACTTTGAAACATAAGGAGATTTGAG
          1 AGGAGAGGTCGAGGTCGAGGTGAAAACCCGTAAAGGGCACTTTGAAACATAAGGAGATTTGAG

       3351 TTGAAAACCT


Statistics
Matches: 62,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  63   62  1.00

ACGTcount: A:0.35, C:0.13, G:0.34, T:0.18


Consensus pattern (63 bp):   
AGGAGAGGTCGAGGTCGAGGTGAAAACCCGTAAAGGGCACTTTGAAACATAAGGAGATTTGAG
Done.