Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007300.1 Kokia drynarioides strain JFW-HI SEQ_121916, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2423
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.32


Found at i:1620 original size:22 final size:22

Alignment explanation


    Indices: 1594--1637  Score: 88
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       1584 TAGTTGAGCA

                                  
       1594 TGATTATGGAAGAAATCATACT
          1 TGATTATGGAAGAAATCATACT

                                  
       1616 TGATTATGGAAGAAATCATACT
          1 TGATTATGGAAGAAATCATACT

       1638 CAACATTTTT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.41, C:0.09, G:0.18, T:0.32


Consensus pattern (22 bp):   
TGATTATGGAAGAAATCATACT

Found at i:1940 original size:23 final size:23

Alignment explanation


    Indices: 1901--1958  Score: 71
    Period size: 23  Copynumber: 2.5  Consensus size: 23

       1891 CGTCCATCAT

                  * *              
       1901 TGCTGACTAGACCTTCTAGAAAC
          1 TGCTGATTGGACCTTCTAGAAAC

              *                  **
       1924 TGTTGATTGGACCTTCTAGAAGT
          1 TGCTGATTGGACCTTCTAGAAAC

                        
       1947 TGCTGATTGGAC
          1 TGCTGATTGGAC

       1959 GCCACGTCAG


Statistics
Matches: 29,  Mismatches: 6, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  23   29  1.00

ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33


Consensus pattern (23 bp):   
TGCTGATTGGACCTTCTAGAAAC
Done.