Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007302.1 Kokia drynarioides strain JFW-HI SEQ_121918, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2788
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.38


Found at i:1975 original size:3 final size:3

Alignment explanation


    Indices: 1961--2013  Score: 88
    Period size: 3  Copynumber: 17.7  Consensus size: 3

       1951 TATATGTCAT

                     *                   *                                 
       1961 ATA ATA ACA ATA ATA ATA ATA ACA ATA ATA ATA ATA ATA ATA ATA ATA
          1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA

                  
       2009 ATA AT
          1 ATA AT

       2014 TTAAGACATT


Statistics
Matches: 46,  Mismatches: 4, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   3   46  1.00

ACGTcount: A:0.66, C:0.04, G:0.00, T:0.30


Consensus pattern (3 bp):   
ATA

Done.