Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007311.1 Kokia drynarioides strain JFW-HI SEQ_121927, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11610
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34


Found at i:960 original size:23 final size:21

Alignment explanation


    Indices: 925--968  Score: 52
    Period size: 23  Copynumber: 2.0  Consensus size: 21

        915 TATTTATTTA

                                   
        925 TATTTAAAATATTACGTTTTATT
          1 TATTTAAAATATTA--TTTTATT

                  * *            
        948 TATTTATATTATTATTTTATT
          1 TATTTAAAATATTATTTTATT

        969 ACGAAGTAAT


Statistics
Matches: 19,  Mismatches: 2, Indels: 2
        0.83            0.09        0.09

Matches are distributed among these distances:
  21    7  0.37
  23   12  0.63

ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64


Consensus pattern (21 bp):   
TATTTAAAATATTATTTTATT
Done.