Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007312.1 Kokia drynarioides strain JFW-HI SEQ_121928, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1689
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30


Found at i:116 original size:18 final size:17

Alignment explanation


    Indices: 93--126  Score: 50
    Period size: 18  Copynumber: 1.9  Consensus size: 17

         83 TTTAAAAGAA

                              
         93 AATCAACAAAAGATTAGC
          1 AATCAACAAAAG-TTAGC

                  *         
        111 AATCAATAAAAGTTAG
          1 AATCAACAAAAGTTAG

        127 AAAAAGAATA


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  17    4  0.27
  18   11  0.73

ACGTcount: A:0.56, C:0.12, G:0.12, T:0.21


Consensus pattern (17 bp):   
AATCAACAAAAGTTAGC
Done.