Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007313.1 Kokia drynarioides strain JFW-HI SEQ_121929, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3146
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.35


Found at i:277 original size:13 final size:14

Alignment explanation


    Indices: 259--291  Score: 59
    Period size: 13  Copynumber: 2.4  Consensus size: 14

        249 TGCTCTATTC

                          
        259 TTTTCTTTTTC-TT
          1 TTTTCTTTTTCATT

                          
        272 TTTTCTTTTTCATT
          1 TTTTCTTTTTCATT

                  
        286 TTTTCT
          1 TTTTCT

        292 AAGCATCATT


Statistics
Matches: 19,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  13   11  0.58
  14    8  0.42

ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82


Consensus pattern (14 bp):   
TTTTCTTTTTCATT
Done.