Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007317.1 Kokia drynarioides strain JFW-HI SEQ_121933, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2561
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.35


Found at i:1610 original size:30 final size:31

Alignment explanation


    Indices: 1576--1634  Score: 93
    Period size: 30  Copynumber: 1.9  Consensus size: 31

       1566 CTCACTAATA

                                           
       1576 AGGGTTCGCATATA-AGTTTCACATGCAATG
          1 AGGGTTCGCATATAGAGTTTCACATGCAATG

                     *     *             
       1606 AGGGTTCGCCTATAGGGTTTCACATGCAA
          1 AGGGTTCGCATATAGAGTTTCACATGCAA

       1635 GGGGGTACGC


Statistics
Matches: 26,  Mismatches: 2, Indels: 1
        0.90            0.07        0.03

Matches are distributed among these distances:
  30   13  0.50
  31   13  0.50

ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29


Consensus pattern (31 bp):   
AGGGTTCGCATATAGAGTTTCACATGCAATG

Done.