Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007318.1 Kokia drynarioides strain JFW-HI SEQ_121934, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2965
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28


Found at i:1001 original size:39 final size:39

Alignment explanation


    Indices: 929--1046  Score: 121
    Period size: 39  Copynumber: 3.1  Consensus size: 39

        919 TCGCTACCTA

                *     *          *  *   *          
        929 GCTTCACGATGTTTATAGTGTCACCGTCGGTTCAGTATT
          1 GCTTTACGATATTTATAGTGTTACTGTCAGTTCAGTATT

                                   *          *    
        968 GCTTTACGATATTTATAGTGTTATTGTCAGTTCAATATT
          1 GCTTTACGATATTTATAGTGTTACTGTCAGTTCAGTATT

            * *     *      *             *         
       1007 ACATTACGGTATTTACAGTGTTACTGTCAATTCAGT-TT
          1 GCTTTACGATATTTATAGTGTTACTGTCAGTTCAGTATT

              
       1045 GC
          1 GC

       1047 ATTGCAGTGT


Statistics
Matches: 64,  Mismatches: 15, Indels: 1
        0.80            0.19        0.01

Matches are distributed among these distances:
  38    3  0.05
  39   61  0.95

ACGTcount: A:0.23, C:0.16, G:0.19, T:0.42


Consensus pattern (39 bp):   
GCTTTACGATATTTATAGTGTTACTGTCAGTTCAGTATT
Done.