Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007322.1 Kokia drynarioides strain JFW-HI SEQ_121938, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1774
ACGTcount: A:0.37, C:0.12, G:0.11, T:0.41


Found at i:1293 original size:13 final size:13

Alignment explanation


    Indices: 1272--1314  Score: 52
    Period size: 13  Copynumber: 3.2  Consensus size: 13

       1262 TCTTTTTACA

                         
       1272 TTAAAATATTATT
          1 TTAAAATATTATT

                *        
       1285 TTAATATATT-TT
          1 TTAAAATATTATT

                           
       1297 CATTAAAATATTATT
          1 --TTAAAATATTATT

               
       1312 TTA
          1 TTA

       1315 TAATTAATGA


Statistics
Matches: 25,  Mismatches: 2, Indels: 6
        0.76            0.06        0.18

Matches are distributed among these distances:
  12    2  0.08
  13   12  0.48
  14    9  0.36
  15    2  0.08

ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56


Consensus pattern (13 bp):   
TTAAAATATTATT
Done.