Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007329.1 Kokia drynarioides strain JFW-HI SEQ_121945, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 780

Length: 1301
ACGTcount: A:0.38, C:0.13, G:0.10, T:0.40


Found at i:485 original size:38 final size:38

Alignment explanation


    Indices: 409--494  Score: 86
    Period size: 38  Copynumber: 2.2  Consensus size: 38

        399 ATCATGATAT

                           *                 *    
        409 TTACAATATACAATTGAAAATATAATTTAAAAATTTAC
          1 TTACAATATACAATTAAAAATATAATTTAAAAAGTTAC

                                          **        
        447 TTACAAT-TA-AATTAAAAATTATATATTTGTAAAGTTAC
          1 TTACAATATACAATTAAAAA-TATA-ATTTAAAAAGTTAC

                 *    
        485 TATACCATAT
          1 T-TACAATAT

        495 TTATTAATAA


Statistics
Matches: 39,  Mismatches: 5, Indels: 6
        0.78            0.10        0.12

Matches are distributed among these distances:
  36    8  0.21
  37    6  0.15
  38   19  0.49
  39    5  0.13
  40    1  0.03

ACGTcount: A:0.49, C:0.08, G:0.03, T:0.40


Consensus pattern (38 bp):   
TTACAATATACAATTAAAAATATAATTTAAAAAGTTAC
Done.