Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007333.1 Kokia drynarioides strain JFW-HI SEQ_121949, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2135
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36


Found at i:498 original size:45 final size:45

Alignment explanation


    Indices: 434--523  Score: 180
    Period size: 45  Copynumber: 2.0  Consensus size: 45

        424 TAACTAGTCA

                                                         
        434 ACTATTTTATCAAAATTCCCTCAATGCACCAATTTAACCAAAATT
          1 ACTATTTTATCAAAATTCCCTCAATGCACCAATTTAACCAAAATT

                                                         
        479 ACTATTTTATCAAAATTCCCTCAATGCACCAATTTAACCAAAATT
          1 ACTATTTTATCAAAATTCCCTCAATGCACCAATTTAACCAAAATT

        524 TAGCAACTAA


Statistics
Matches: 45,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  45   45  1.00

ACGTcount: A:0.40, C:0.24, G:0.02, T:0.33


Consensus pattern (45 bp):   
ACTATTTTATCAAAATTCCCTCAATGCACCAATTTAACCAAAATT
Done.