Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007334.1 Kokia drynarioides strain JFW-HI SEQ_121950, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4388
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35


Found at i:2628 original size:6 final size:6

Alignment explanation


    Indices: 2617--2648  Score: 64
    Period size: 6  Copynumber: 5.3  Consensus size: 6

       2607 TCTGTCCCAT

                                                 
       2617 CCTTCC CCTTCC CCTTCC CCTTCC CCTTCC CC
          1 CCTTCC CCTTCC CCTTCC CCTTCC CCTTCC CC

       2649 GAAGCTTTTC


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   26  1.00

ACGTcount: A:0.00, C:0.69, G:0.00, T:0.31


Consensus pattern (6 bp):   
CCTTCC

Done.