Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007339.1 Kokia drynarioides strain JFW-HI SEQ_121955, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1909
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37


Found at i:1038 original size:28 final size:28

Alignment explanation


    Indices: 1001--1066  Score: 89
    Period size: 30  Copynumber: 2.3  Consensus size: 28

        991 GAGTTTCACG

                               *        
       1001 TGTATAATTGCAC-CAAATTAAAGTTCA
          1 TGTATAATTGCACACAAATCAAAGTTCA

                            *             
       1028 TGTATCAATTGCACATTAAATCAAAGTTCA
          1 TGTAT-AATTGCACA-CAAATCAAAGTTCA

                     
       1058 TGTATAATT
          1 TGTATAATT

       1067 TTGAGATATA


Statistics
Matches: 34,  Mismatches: 2, Indels: 4
        0.85            0.05        0.10

Matches are distributed among these distances:
  27    5  0.15
  28    8  0.24
  29    4  0.12
  30   17  0.50

ACGTcount: A:0.39, C:0.14, G:0.11, T:0.36


Consensus pattern (28 bp):   
TGTATAATTGCACACAAATCAAAGTTCA
Done.