Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007340.1 Kokia drynarioides strain JFW-HI SEQ_121956, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3629
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.37


Found at i:2468 original size:22 final size:22

Alignment explanation


    Indices: 2443--2493  Score: 66
    Period size: 22  Copynumber: 2.3  Consensus size: 22

       2433 TTTATATATC

                              *   
       2443 TTTATTAAAAAATAAATTGATT
          1 TTTATTAAAAAATAAATTCATT

                       * **       
       2465 TTTATTAAAAATTTTATTCATT
          1 TTTATTAAAAAATAAATTCATT

                   
       2487 TTTATTA
          1 TTTATTA

       2494 TTTAAGATTG


Statistics
Matches: 25,  Mismatches: 4, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  22   25  1.00

ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55


Consensus pattern (22 bp):   
TTTATTAAAAAATAAATTCATT

Found at i:2833 original size:29 final size:31

Alignment explanation


    Indices: 2800--2876  Score: 95
    Period size: 29  Copynumber: 2.5  Consensus size: 31

       2790 TTTGTCTCAA

                               *     *     
       2800 GTTACATTTTAGTCACTTATGTT-TTA-AAT
          1 GTTACATTTTAGTCACTTACGTTATCATAAT

                 *                       * 
       2829 GTTACGTTTTAGTCACTTACGTTATCATATT
          1 GTTACATTTTAGTCACTTACGTTATCATAAT

              *              
       2860 GTAACATTTTAGTCACT
          1 GTTACATTTTAGTCACT

       2877 GAGTTATTAA


Statistics
Matches: 40,  Mismatches: 6, Indels: 2
        0.83            0.12        0.04

Matches are distributed among these distances:
  29   21  0.52
  30    2  0.05
  31   17  0.43

ACGTcount: A:0.26, C:0.14, G:0.12, T:0.48


Consensus pattern (31 bp):   
GTTACATTTTAGTCACTTACGTTATCATAAT

Done.