Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007345.1 Kokia drynarioides strain JFW-HI SEQ_121961, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5741
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27


Found at i:3676 original size:2 final size:2

Alignment explanation


    Indices: 3669--3698  Score: 60
    Period size: 2  Copynumber: 15.0  Consensus size: 2

       3659 TAAACAATAC

                                                        
       3669 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

       3699 GCATGTATAC


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   28  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Done.