Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007349.1 Kokia drynarioides strain JFW-HI SEQ_121965, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1742
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.34


Found at i:1248 original size:19 final size:18

Alignment explanation


    Indices: 1226--1269  Score: 52
    Period size: 19  Copynumber: 2.3  Consensus size: 18

       1216 TACAAATTCA

                               
       1226 TAATTATACATTTAATTTT
          1 TAATTATAC-TTTAATTTT

                    *     *    
       1245 TAATTTATTCTTTATTTTT
          1 TAA-TTATACTTTAATTTT

                  
       1264 TAATTA
          1 TAATTA

       1270 AATTAACCAT


Statistics
Matches: 22,  Mismatches: 2, Indels: 3
        0.81            0.07        0.11

Matches are distributed among these distances:
  18    3  0.14
  19   14  0.64
  20    5  0.23

ACGTcount: A:0.32, C:0.05, G:0.00, T:0.64


Consensus pattern (18 bp):   
TAATTATACTTTAATTTT
Done.