Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000735.1 Kokia drynarioides strain JFW-HI SEQ_111764, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4100
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32


Found at i:2899 original size:20 final size:21

Alignment explanation


    Indices: 2854--2899  Score: 51
    Period size: 20  Copynumber: 2.3  Consensus size: 21

       2844 CATACTTGGT

                              ** 
       2854 TGACTCCTTTACCGGAACTCC
          1 TGACTCCTTTACCGGAACAAC

                        *        
       2875 T-ACTCCTTTACTGGAA-AAC
          1 TGACTCCTTTACCGGAACAAC

                  
       2894 TGACTC
          1 TGACTC

       2900 TGCTGTGAAA


Statistics
Matches: 21,  Mismatches: 3, Indels: 3
        0.78            0.11        0.11

Matches are distributed among these distances:
  19    2  0.10
  20   18  0.86
  21    1  0.05

ACGTcount: A:0.24, C:0.33, G:0.13, T:0.30


Consensus pattern (21 bp):   
TGACTCCTTTACCGGAACAAC
Done.