Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007356.1 Kokia drynarioides strain JFW-HI SEQ_121972, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2482
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.36


Found at i:1578 original size:50 final size:50

Alignment explanation


    Indices: 1519--1617  Score: 198
    Period size: 50  Copynumber: 2.0  Consensus size: 50

       1509 TTATAGCTCA

                                                              
       1519 TTTCCTTATAGTTTCCTTTACAGATACTCGAGGTATAGGTGACTTGGTAT
          1 TTTCCTTATAGTTTCCTTTACAGATACTCGAGGTATAGGTGACTTGGTAT

                                                             
       1569 TTTCCTTATAGTTTCCTTTACAGATACTCGAGGTATAGGTGACTTGGTA
          1 TTTCCTTATAGTTTCCTTTACAGATACTCGAGGTATAGGTGACTTGGTA

       1618 CCCGAAGGCA


Statistics
Matches: 49,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  50   49  1.00

ACGTcount: A:0.22, C:0.16, G:0.20, T:0.41


Consensus pattern (50 bp):   
TTTCCTTATAGTTTCCTTTACAGATACTCGAGGTATAGGTGACTTGGTAT
Done.