Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007357.1 Kokia drynarioides strain JFW-HI SEQ_121973, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6982
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.33


Found at i:772 original size:50 final size:50

Alignment explanation


    Indices: 697--795  Score: 198
    Period size: 50  Copynumber: 2.0  Consensus size: 50

        687 TGCCTTCGGG

                                                              
        697 TACCAAGTCACCTATACCTCGAGTATCTGTAAAGGAAACTATAAGGAAAA
          1 TACCAAGTCACCTATACCTCGAGTATCTGTAAAGGAAACTATAAGGAAAA

                                                             
        747 TACCAAGTCACCTATACCTCGAGTATCTGTAAAGGAAACTATAAGGAAA
          1 TACCAAGTCACCTATACCTCGAGTATCTGTAAAGGAAACTATAAGGAAA

        796 TGAGCTATAA


Statistics
Matches: 49,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  50   49  1.00

ACGTcount: A:0.41, C:0.20, G:0.16, T:0.22


Consensus pattern (50 bp):   
TACCAAGTCACCTATACCTCGAGTATCTGTAAAGGAAACTATAAGGAAAA
Done.