Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007358.1 Kokia drynarioides strain JFW-HI SEQ_121974, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1951
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37


Found at i:464 original size:215 final size:213

Alignment explanation


    Indices: 7--483  Score: 670
    Period size: 215  Copynumber: 2.2  Consensus size: 213

          1 CTCAAA

                       *                          *          *               
          7 AAATCACATCAATTGGTCTAAATAGTTTGTCATTTTGTGAACAAGTTTTTGTCATCGAATTAAAA
          1 AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCATCGAATTAAAA

                                           *                  *           * *
         72 ACTTATTTACATGAGAATTATTTCTCTGGTTCTTGGACGAACTTCCGAAATTATCAAACTTTTAC
         66 ACTTATTTACATGAGAATTATTTCTCTGGTTATTGGACGAACTTCCGAAACTATCAAACTTTGAA

                 *                 *               *               *        *
        137 GAGTTCTTTTATAACTCCGGTTCTTTAAAGTATTCAAGATGATCCATTCCTTCGATCAATTTTTT
        131 GAGTTATTTTATAACTCCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC

                         *    
        202 GAACATTCCATGCTTGGG
        196 GAACATTCCATGCATGGG

                                                  *              * *         
        220 AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTTAACAAGTTTTGGTCTTTGAATTAAAA
          1 AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCATCGAATTAAAA

                      *         *                                            
        285 ACTTATTTACGTGAGAATTCTTTCTCTCTTGGTTATTGGACGAACTTCCG-AACTAGTCAAACTT
         66 ACTTATTTACATGAGAATT-ATT-TCTC-TGGTTATTGGACGAACTTCCGAAACTA-TCAAACTT

                                **          *                                
        349 TGAAGAGTTATTTTATAACTTTGGTTCCTTAACGT-TTCAAGACGATCCATTCCTTCGAGCAATT
        127 TGAAGAGTTATTTTATAACTCCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT

                                  
        413 TTTCGAACATTCCATGCATGGG
        192 TTTCGAACATTCCATGCATGGG

                **   *        *                         *    
        435 AAATTGCATTATTTGGTCAAAATAGTTTGTCATTTTGTAAACAATTTTT
          1 AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT

        484 TTATGCAAAC


Statistics
Matches: 234,  Mismatches: 26, Indels: 6
        0.88            0.10        0.02

Matches are distributed among these distances:
 213   78  0.33
 214    2  0.01
 215   98  0.42
 216   56  0.24

ACGTcount: A:0.29, C:0.16, G:0.15, T:0.40


Consensus pattern (213 bp):   
AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCATCGAATTAAAA
ACTTATTTACATGAGAATTATTTCTCTGGTTATTGGACGAACTTCCGAAACTATCAAACTTTGAA
GAGTTATTTTATAACTCCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC
GAACATTCCATGCATGGG
Done.