Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000736.1 Kokia drynarioides strain JFW-HI SEQ_111765, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4775
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32


Found at i:4700 original size:39 final size:39

Alignment explanation


    Indices: 4657--4737  Score: 108
    Period size: 39  Copynumber: 2.1  Consensus size: 39

       4647 TAACGATAAT

                         *     *  *                
       4657 ACTGTAAATATCGTAACACGATTCTAAATTGACGGTAAC
          1 ACTGTAAATATCGCAACACAATACTAAATTGACGGTAAC

                            **       *             
       4696 ACTGTAAATATCGCAATGCAATACTGAATTGACGGTAAC
          1 ACTGTAAATATCGCAACACAATACTAAATTGACGGTAAC

               
       4735 ACT
          1 ACT

       4738 AGAAATACCG


Statistics
Matches: 36,  Mismatches: 6, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  39   36  1.00

ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27


Consensus pattern (39 bp):   
ACTGTAAATATCGCAACACAATACTAAATTGACGGTAAC
Done.