Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007372.1 Kokia drynarioides strain JFW-HI SEQ_121988, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15526
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.34


Found at i:1657 original size:22 final size:21

Alignment explanation


    Indices: 1624--1667  Score: 61
    Period size: 22  Copynumber: 2.0  Consensus size: 21

       1614 TTAATCTCAT

                                 
       1624 ATTTTTATTTTTAAGAATTTA
          1 ATTTTTATTTTTAAGAATTTA

                         **       
       1645 ATTTTTATATTTTTTGAATTTA
          1 ATTTTTAT-TTTTAAGAATTTA

             
       1667 A
          1 A

       1668 AAATTCAAGT


Statistics
Matches: 20,  Mismatches: 2, Indels: 1
        0.87            0.09        0.04

Matches are distributed among these distances:
  21    8  0.40
  22   12  0.60

ACGTcount: A:0.32, C:0.00, G:0.05, T:0.64


Consensus pattern (21 bp):   
ATTTTTATTTTTAAGAATTTA

Found at i:2069 original size:6 final size:6

Alignment explanation


    Indices: 2060--2086  Score: 54
    Period size: 6  Copynumber: 4.5  Consensus size: 6

       2050 TTAACCTTCG

                                           
       2060 CCTTGA CCTTGA CCTTGA CCTTGA CCT
          1 CCTTGA CCTTGA CCTTGA CCTTGA CCT

       2087 CCATGGCACT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   21  1.00

ACGTcount: A:0.15, C:0.37, G:0.15, T:0.33


Consensus pattern (6 bp):   
CCTTGA

Found at i:12255 original size:25 final size:24

Alignment explanation


    Indices: 12202--12247  Score: 83
    Period size: 24  Copynumber: 1.9  Consensus size: 24

      12192 TGTTGTCTTG

                                    
      12202 CATATTTTACTGCAGAAAATCTAC
          1 CATATTTTACTGCAGAAAATCTAC

                    *             
      12226 CATATTTTTCTGCAGAAAATCT
          1 CATATTTTACTGCAGAAAATCT

      12248 GCTTATATAA


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  24   21  1.00

ACGTcount: A:0.35, C:0.20, G:0.09, T:0.37


Consensus pattern (24 bp):   
CATATTTTACTGCAGAAAATCTAC
Done.