Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007374.1 Kokia drynarioides strain JFW-HI SEQ_121990, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5705
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32


Found at i:5578 original size:15 final size:16

Alignment explanation


    Indices: 5558--5589  Score: 57
    Period size: 15  Copynumber: 2.1  Consensus size: 16

       5548 TAGGAATTAG

                            
       5558 TTATGCATGAT-GATA
          1 TTATGCATGATGGATA

                            
       5573 TTATGCATGATGGATA
          1 TTATGCATGATGGATA

             
       5589 T
          1 T

       5590 GGAATGTATT


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  15   11  0.69
  16    5  0.31

ACGTcount: A:0.31, C:0.06, G:0.22, T:0.41


Consensus pattern (16 bp):   
TTATGCATGATGGATA
Done.