Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007375.1 Kokia drynarioides strain JFW-HI SEQ_121991, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6671
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33


Found at i:5022 original size:21 final size:20

Alignment explanation


    Indices: 4996--5042  Score: 69
    Period size: 21  Copynumber: 2.3  Consensus size: 20

       4986 ATTATTTAAG

                                  
       4996 AAAATTTTTA-AACTTATTTTT
          1 AAAATTTTTATAA-TT-TTTTT

                                
       5017 AAAATTTTTATAATTTTTTT
          1 AAAATTTTTATAATTTTTTT

                  
       5037 AAAATT
          1 AAAATT

       5043 ATAATTTGAA


Statistics
Matches: 25,  Mismatches: 0, Indels: 3
        0.89            0.00        0.11

Matches are distributed among these distances:
  20   11  0.44
  21   12  0.48
  22    2  0.08

ACGTcount: A:0.40, C:0.02, G:0.00, T:0.57


Consensus pattern (20 bp):   
AAAATTTTTATAATTTTTTT

Found at i:5094 original size:19 final size:19

Alignment explanation


    Indices: 5011--5094  Score: 68
    Period size: 18  Copynumber: 4.3  Consensus size: 19

       5001 TTTTAAACTT

                                
       5011 ATTTTTAAAATT-TTTAT-A
          1 ATTTTTAAAATTATTT-TGA

                                   
       5029 ATTTTTTTAAAATTATAATTTGA
          1 A--TTTTTAAAATTAT--TTTGA

                     *       *  
       5052 ATTTTTATAGA-TATTTAGA
          1 ATTTTTA-AAATTATTTTGA

                               
       5071 A-TTTTAAAATTATTTTGA
          1 ATTTTTAAAATTATTTTGA

                  
       5089 ATTTTT
          1 ATTTTT

       5095 TCTTTTGTAA


Statistics
Matches: 53,  Mismatches: 4, Indels: 17
        0.72            0.05        0.23

Matches are distributed among these distances:
  17    2  0.04
  18   14  0.26
  19    9  0.17
  20   11  0.21
  21   10  0.19
  22    3  0.06
  23    4  0.08

ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58


Consensus pattern (19 bp):   
ATTTTTAAAATTATTTTGA
Done.