Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007376.1 Kokia drynarioides strain JFW-HI SEQ_121992, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1916
ACGTcount: A:0.40, C:0.14, G:0.09, T:0.37


Found at i:240 original size:6 final size:6

Alignment explanation


    Indices: 200--227  Score: 56
    Period size: 6  Copynumber: 4.7  Consensus size: 6

        190 ACATCCATTA

                                            
        200 CATTTC CATTTC CATTTC CATTTC CATT
          1 CATTTC CATTTC CATTTC CATTTC CATT

        228 ATTATTTTCA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   22  1.00

ACGTcount: A:0.18, C:0.32, G:0.00, T:0.50


Consensus pattern (6 bp):   
CATTTC

Found at i:1291 original size:27 final size:25

Alignment explanation


    Indices: 1238--1291  Score: 63
    Period size: 25  Copynumber: 2.1  Consensus size: 25

       1228 GAAGGGTTAT

                             * *  *  
       1238 AATATATATACAAAGGAGATTTTCA
          1 AATATATATACAAAGGAAAATTACA

                                       
       1263 AATATATATACAAAGGGAAAAATTACA
          1 AATATATATACAAA-GG-AAAATTACA

              
       1290 AA
          1 AA

       1292 AATCTTAAAC


Statistics
Matches: 24,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  25   14  0.58
  26    2  0.08
  27    8  0.33

ACGTcount: A:0.56, C:0.07, G:0.11, T:0.26


Consensus pattern (25 bp):   
AATATATATACAAAGGAAAATTACA
Done.