Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007378.1 Kokia drynarioides strain JFW-HI SEQ_121994, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6928
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36


Found at i:2683 original size:12 final size:14

Alignment explanation


    Indices: 2666--2732  Score: 78
    Period size: 12  Copynumber: 5.4  Consensus size: 14

       2656 TGTTATATAA

                          
       2666 TATATATG-A-ATG
          1 TATATATGTATATG

                          
       2678 TATATATGTATATG
          1 TATATATGTATATG

                          
       2692 --TATATGTATATG
          1 TATATATGTATATG

                          
       2704 --TATATGTATATG
          1 TATATATGTATATG

                          
       2716 --TATATGTATATG
          1 TATATATGTATATG

                 
       2728 TATAT
          1 TATAT

       2733 GTATATTAGC


Statistics
Matches: 51,  Mismatches: 0, Indels: 6
        0.89            0.00        0.11

Matches are distributed among these distances:
  12   44  0.86
  13    1  0.02
  14    6  0.12

ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49


Consensus pattern (14 bp):   
TATATATGTATATG

Found at i:2691 original size:6 final size:6

Alignment explanation


    Indices: 2680--2738  Score: 118
    Period size: 6  Copynumber: 9.8  Consensus size: 6

       2670 TATGAATGTA

                                                                   
       2680 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
          1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG

                        
       2728 TATATG TATAT
          1 TATATG TATAT

       2739 TAGCAGAAAT


Statistics
Matches: 53,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   53  1.00

ACGTcount: A:0.34, C:0.00, G:0.15, T:0.51


Consensus pattern (6 bp):   
TATATG

Found at i:2691 original size:18 final size:18

Alignment explanation


    Indices: 2659--2738  Score: 81
    Period size: 18  Copynumber: 4.5  Consensus size: 18

       2649 TCACTTGTGT

                     *        
       2659 TATATA-ATATATATGAA
          1 TATATATATGTATATGAA

             *              * 
       2676 TGTATATATGTATATGTA
          1 TATATATATGTATATGAA

               *            * 
       2694 TATGTATATGTATATGTA
          1 TATATATATGTATATGAA

               *            * 
       2712 TATGTATATGTATATGTA
          1 TATATATATGTATATGAA

               *     
       2730 TATGTATAT
          1 TATATATAT

       2739 TAGCAGAAAT


Statistics
Matches: 57,  Mismatches: 5, Indels: 1
        0.90            0.08        0.02

Matches are distributed among these distances:
  17    5  0.09
  18   52  0.91

ACGTcount: A:0.38, C:0.00, G:0.14, T:0.49


Consensus pattern (18 bp):   
TATATATATGTATATGAA

Done.