Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000738.1 Kokia drynarioides strain JFW-HI SEQ_111767, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2821
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.28


Found at i:2263 original size:15 final size:16

Alignment explanation


    Indices: 2238--2268  Score: 55
    Period size: 15  Copynumber: 2.0  Consensus size: 16

       2228 ACGACCCTTA

                            
       2238 CGAACATGGTACTACC
          1 CGAACATGGTACTACC

                            
       2254 CGAA-ATGGTACTACC
          1 CGAACATGGTACTACC

       2269 TTGGCTAAGA


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  15   11  0.73
  16    4  0.27

ACGTcount: A:0.32, C:0.29, G:0.19, T:0.19


Consensus pattern (16 bp):   
CGAACATGGTACTACC
Done.