Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01007383.1 Kokia drynarioides strain JFW-HI SEQ_121999, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2047
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.33
Found at i:1685 original size:155 final size:155
Alignment explanation
Indices: 1402--1689 Score: 384
Period size: 155 Copynumber: 1.9 Consensus size: 155
1392 TACAGGGCTG
* * **
1402 CAACATGCAGCAGAAGCAGAACCGAAACATAAAGAACAAGCGAGCAGAAACAAAAGCTAAAAAAC
1 CAACATGCAACAGAAGCAGAACCGAAACACAAAGAACAAAAGAGCAGAAACAAAAGCTAAAAAAC
* *
1467 AATCCCTACAAGTACATCCTACACAGCACTCCTATTAGCTTAATCACCAGCCAGCAAGATCACCC
66 AATCCCTACAAGCACATCCTACACAGCACTCCTATTAGCTTAATCACCAACCAGCAAGATCA-CC
1532 ATAACCCATGACCAGAGACCAACACT
130 ATAACCCATGACCAGAGACCAACACT
* * *
1558 CAACATGCAACAGAAGCATAACCGAACCACAAAGAATCAAAAG-GCA-AGAGCAAAAGCTAAAAA
1 CAACATGCAACAGAAGCAGAACCGAAACACAAAGAA-CAAAAGAGCAGA-AACAAAAGCTAAAAA
* * ** * **
1621 A-AATCCCTACAAGCACATCCTATACAGTACTTTTTTTAGCTTGTTCACCAACCAGCAAGATCAC
64 ACAATCCCTACAAGCACATCCTACACAGCACTCCTATTAGCTTAATCACCAACCAGCAAGATCAC
1685 CATAA
129 CATAA
1690 TCACCACCAC
Statistics
Matches: 114, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
154 6 0.05
155 54 0.47
156 50 0.44
157 4 0.04
ACGTcount: A:0.44, C:0.28, G:0.13, T:0.15
Consensus pattern (155 bp):
CAACATGCAACAGAAGCAGAACCGAAACACAAAGAACAAAAGAGCAGAAACAAAAGCTAAAAAAC
AATCCCTACAAGCACATCCTACACAGCACTCCTATTAGCTTAATCACCAACCAGCAAGATCACCA
TAACCCATGACCAGAGACCAACACT
Done.