Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007386.1 Kokia drynarioides strain JFW-HI SEQ_122004, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7248
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.36

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:2177 original size:15 final size:16

Alignment explanation


    Indices: 2140--2180  Score: 57
    Period size: 15  Copynumber: 2.6  Consensus size: 16

       2130 CGATAGTAAA

                             
       2140 TTATAATTATATCATTT
          1 TTATAATT-TATCATTT

             *              
       2157 TAATAATTTAT-ATTT
          1 TTATAATTTATCATTT

                     
       2172 TTATAATTT
          1 TTATAATTT

       2181 TTAAAATATT


Statistics
Matches: 22,  Mismatches: 2, Indels: 2
        0.85            0.08        0.08

Matches are distributed among these distances:
  15   12  0.55
  16    3  0.14
  17    7  0.32

ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61


Consensus pattern (16 bp):   
TTATAATTTATCATTT

Found at i:4506 original size:17 final size:18

Alignment explanation


    Indices: 4478--4514  Score: 58
    Period size: 17  Copynumber: 2.1  Consensus size: 18

       4468 AATATATTAG

                          *   
       4478 ATTATATTATAAAAGTTT
          1 ATTATATTATAAAAATTT

                              
       4496 ATTAT-TTATAAAAATTT
          1 ATTATATTATAAAAATTT

              
       4513 AT
          1 AT

       4515 ACATGAAATA


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  17   13  0.72
  18    5  0.28

ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51


Consensus pattern (18 bp):   
ATTATATTATAAAAATTT
Done.