Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000739.1 Kokia drynarioides strain JFW-HI SEQ_111768, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 609

Length: 1016
ACGTcount: A:0.32, C:0.20, G:0.13, T:0.35


Found at i:843 original size:18 final size:18

Alignment explanation


    Indices: 822--880  Score: 91
    Period size: 18  Copynumber: 3.3  Consensus size: 18

        812 TTCTACAGGA

                  *         * 
        822 TCTTCCACAGGATCTTTT
          1 TCTTCCTCAGGATCTTCT

                 *            
        840 TCTTCTTCAGGATCTTCT
          1 TCTTCCTCAGGATCTTCT

                              
        858 TCTTCCTCAGGATCTTCT
          1 TCTTCCTCAGGATCTTCT

                 
        876 TCTTC
          1 TCTTC

        881 TTCTTCTTCT


Statistics
Matches: 37,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  18   37  1.00

ACGTcount: A:0.12, C:0.31, G:0.10, T:0.47


Consensus pattern (18 bp):   
TCTTCCTCAGGATCTTCT

Done.