genome.fa.s7392.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01007392.1 Kokia drynarioides strain JFW-HI SEQ_122010, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44238

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
574--612	20	2.0	20	100	0	78	10	2	46	41	1.51
1319--1349	16	1.9	16	93	0	53	58	19	0	22	1.40
1447--1503	24	2.4	24	82	5	71	47	1	12	38	1.51
6908--7043	55	2.4	56	85	6	168	48	2	2	46	1.29
6923--7043	57	2.1	58	86	4	131	49	3	0	46	1.24
11843--11886	23	2.0	22	82	13	54	70	0	20	9	1.14
19280--19307	13	2.2	13	100	0	56	50	7	0	42	1.30
21566--21595	14	2.2	13	94	5	51	23	16	43	16	1.87
21669--21697	14	2.1	14	93	6	51	82	0	10	6	0.83
22205--22247	21	2.0	21	86	8	61	39	18	0	41	1.51
22238--22615	57	6.6	58	72	12	228	33	24	4	37	1.76
22237--22605	29	12.8	29	75	11	228	34	25	4	36	1.77
22245--22700	29	15.9	27	73	13	181	33	26	4	35	1.78
22840--22869	14	2.1	14	93	0	51	20	10	0	70	1.16
27595--27677	11	7.0	11	72	18	60	79	0	19	1	0.80
27593--27660	19	3.3	20	82	12	77	80	0	17	1	0.78
27595--27669	27	2.6	28	89	6	107	80	0	18	1	0.79
27600--27661	6	10.7	6	73	16	51	80	0	17	1	0.79
27604--27674	20	3.4	21	77	12	67	80	0	18	1	0.79
27575--27679	7	14.6	7	75	12	88	78	0	18	3	0.90
27604--27674	22	3.4	20	83	12	72	80	0	18	1	0.79
28496--28795	50	6.0	49	77	5	255	33	17	30	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28835--28950	49	2.4	49	89	2	171	41	14	20	23	1.89
29134--29668	39	13.7	39	73	6	330	23	31	19	25	1.98
29134--29668	78	6.9	77	81	5	388	23	31	19	25	1.98
29134--29511	117	3.2	114	80	8	379	23	31	20	24	1.98
29368--29649	157	1.8	156	88	3	433	23	30	19	27	1.98
30236--30546	29	10.8	30	78	7	209	32	24	5	37	1.77
30243--30602	29	12.5	29	74	12	206	32	24	5	37	1.77
30236--30477	85	2.8	85	83	5	247	33	24	4	36	1.77
30243--30546	59	5.3	57	76	10	219	32	24	5	37	1.78
30244--30573	143	2.3	142	82	6	362	32	24	5	37	1.78
30293--30505	114	1.9	115	84	3	279	32	23	6	36	1.81
30739--30768	14	2.1	14	93	0	51	20	6	3	70	1.25
31938--31988	18	2.9	18	77	13	61	64	3	0	31	1.11
31976--32026	24	2.1	24	85	7	68	56	0	0	43	0.99
32420--32492	29	2.6	29	82	2	85	36	2	4	56	1.33
33014--33055	22	1.9	22	85	9	59	42	21	19	16	1.89
33111--33221	28	4.0	28	85	3	152	42	20	18	18	1.90
35348--35386	18	2.1	19	86	13	55	56	2	2	38	1.27
40718--40772	21	2.6	21	82	0	65	32	27	12	27	1.93
41430--41557	36	3.6	36	94	0	211	22	29	17	30	1.96
43228--43438	59	3.5	59	82	5	228	41	2	20	35	1.66
43238--43422	89	2.1	90	84	5	241	41	1	21	35	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43237--43422	30	6.2	29	84	3	201	41	1	20	36	1.63
43238--43452	89	2.4	88	79	8	229	40	1	20	37	1.64

Tables:   1

The End!