Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007397.1 Kokia drynarioides strain JFW-HI SEQ_122016, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4035
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.35


Found at i:1828 original size:34 final size:34

Alignment explanation


    Indices: 1785--1871  Score: 129
    Period size: 34  Copynumber: 2.6  Consensus size: 34

       1775 ATGGATGTTC

                      *         *  *   *      
       1785 AACCTTCCATATTCCTTAACTTCTTTTGATCTTT
          1 AACCTTCCATCTTCCTTAACCTCCTTTAATCTTT

                                              
       1819 AACCTTCCATCTTCCTTAACCTCCTTTAATCTTT
          1 AACCTTCCATCTTCCTTAACCTCCTTTAATCTTT

                   *           
       1853 AACCTTCTATCTTCCTTAA
          1 AACCTTCCATCTTCCTTAA

       1872 TTTTTCATAT


Statistics
Matches: 48,  Mismatches: 5, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  34   48  1.00

ACGTcount: A:0.22, C:0.31, G:0.01, T:0.46


Consensus pattern (34 bp):   
AACCTTCCATCTTCCTTAACCTCCTTTAATCTTT

Found at i:1837 original size:17 final size:17

Alignment explanation


    Indices: 1817--1871  Score: 51
    Period size: 17  Copynumber: 3.2  Consensus size: 17

       1807 CTTTTGATCT

                             
       1817 TTAACCTTCCATCTTCC
          1 TTAACCTTCCATCTTCC

                        *     *
       1834 TTAACC-TCC-TTTAATCT
          1 TTAACCTTCCATCT--TCC

                     *       
       1851 TTAACCTTCTATCTTCC
          1 TTAACCTTCCATCTTCC

                
       1868 TTAA
          1 TTAA

       1872 TTTTTCATAT


Statistics
Matches: 29,  Mismatches: 5, Indels: 8
        0.69            0.12        0.19

Matches are distributed among these distances:
  15    2  0.07
  16    3  0.10
  17   20  0.69
  18    2  0.07
  19    2  0.07

ACGTcount: A:0.22, C:0.33, G:0.00, T:0.45


Consensus pattern (17 bp):   
TTAACCTTCCATCTTCC
Done.