Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007399.1 Kokia drynarioides strain JFW-HI SEQ_122018, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 23922
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31


Found at i:14596 original size:31 final size:31

Alignment explanation


    Indices: 14561--14619  Score: 118
    Period size: 31  Copynumber: 1.9  Consensus size: 31

      14551 ATGAGCAATA

                                           
      14561 ATAAAGCCAATAAGAAATTTAGTAAATAGTT
          1 ATAAAGCCAATAAGAAATTTAGTAAATAGTT

                                        
      14592 ATAAAGCCAATAAGAAATTTAGTAAATA
          1 ATAAAGCCAATAAGAAATTTAGTAAATA

      14620 ATAGCTGATG


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  31   28  1.00

ACGTcount: A:0.54, C:0.07, G:0.12, T:0.27


Consensus pattern (31 bp):   
ATAAAGCCAATAAGAAATTTAGTAAATAGTT

Found at i:21417 original size:256 final size:257

Alignment explanation


    Indices: 20959--21476  Score: 867
    Period size: 256  Copynumber: 2.0  Consensus size: 257

      20949 ATAGCAAAAC

                                    *                                        
      20959 ATTGATGAGTTGAGCAAATATAGTGGGTGACAATAGTTTAACAAGACATTGCCTTTTTCTACATC
          1 ATTGATGAGTTGAGCAAATATAGTAGGTGACAATAGTTTAACAAGACATTGCCTTTTTCTACATC

                      **     *                 * *                           
      21024 ATCAATATTCTGTACTTTAACACATTATTGTGGTATTTATTACTACAAATCCAACTGGATATGAA
         66 ATCAATATTCACTACTTGAACACATTATTGTGGTAATGATTACTACAAATCCAACTGGATATGAA

                                 *                  *      *         *       
      21089 TAATTATCCCTAAAGAATATATTAAATAGTTATTCAAATATTAGTGTTAATGAGAAAGATTCAAC
        131 TAATTATCCCTAAAGAATATAGTAAATAGTTATTCAAATAGTAGTGTCAATGAGAAAAATTCAAC

            *                                                             
      21154 GCTGAATCTAATTAAGCAAACTATCATAAAACTACGCCCCATAGTCTTTGTTTCAATTT-AA
        196 ACTGAATCTAATTAAGCAAACTATCATAAAACTACGCCCCATAGTCTTTGTTTCAATTTAAA

                   *                                                         
      21215 ATTGATGGGTTGAGCAAATATAGTAGGTGACAATAGTTTAACAAGACATTGCCTTTTTCTACATC
          1 ATTGATGAGTTGAGCAAATATAGTAGGTGACAATAGTTTAACAAGACATTGCCTTTTTCTACATC

                                *                       *                    
      21280 ATCAATATTCACTACTTGAAGACATTATTGTGGTAATGATTACTTCAAATCCAACTGGATATGAA
         66 ATCAATATTCACTACTTGAACACATTATTGTGGTAATGATTACTACAAATCCAACTGGATATGAA

                                                *            *               
      21345 TAATTATCCCTAAAGAATATAGTAAATAGTTATTCACATAGTAGTGTCATTGAGAAAAATTCAAC
        131 TAATTATCCCTAAAGAATATAGTAAATAGTTATTCAAATAGTAGTGTCAATGAGAAAAATTCAAC

                                  *           *                           
      21410 ACTGAATCTAATTAAGCAAACTGTCATAAAACTATGCCCCATAGTCTTTGTTTCAATTTAAA
        196 ACTGAATCTAATTAAGCAAACTATCATAAAACTACGCCCCATAGTCTTTGTTTCAATTTAAA

                 
      21472 ATTGA
          1 ATTGA

      21477 AAAGTGACAA


Statistics
Matches: 243,  Mismatches: 18, Indels: 1
        0.93            0.07        0.00

Matches are distributed among these distances:
 256  236  0.97
 257    7  0.03

ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34


Consensus pattern (257 bp):   
ATTGATGAGTTGAGCAAATATAGTAGGTGACAATAGTTTAACAAGACATTGCCTTTTTCTACATC
ATCAATATTCACTACTTGAACACATTATTGTGGTAATGATTACTACAAATCCAACTGGATATGAA
TAATTATCCCTAAAGAATATAGTAAATAGTTATTCAAATAGTAGTGTCAATGAGAAAAATTCAAC
ACTGAATCTAATTAAGCAAACTATCATAAAACTACGCCCCATAGTCTTTGTTTCAATTTAAA
Done.