Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01000740.1 Kokia drynarioides strain JFW-HI SEQ_111771, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 18553
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Found at i:400 original size:216 final size:215
Alignment explanation
Indices: 1--4915 Score: 4973
Period size: 216 Copynumber: 22.7 Consensus size: 215
*
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTG--TCTCTCTTGGTTCTTGGACGAACTTCTGAA
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAA
* * * * *
64 ATTGTCGAACTTTTACGAGTTATTTTATAACTTCGGTTCCTTAAAGTATTCAAGACAATCCAATC
66 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTC
* * * * * * *
129 CTTCAAGCAATTTTTCAAACATTCCATGCTCGGGAAGTCGCATAATTTTGTCTAAAAAGTTTGTT
131 CTTCGAGCAA-TTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTT-TT
* *
194 -ATTTTGTAAACAAATTTTGGC
194 CATTTTGTAAACAAGTTTTGGT
** * * *
215 CTTTGAATTAAAAACTTATTTTTGTGAGAATTGTTTCTCTCTTGGTTGTTAGACAAACTTCCGAA
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAA
** * ** *
280 CTCATCAAACTTTTACGAGTTCTTTTTTAACTTTTGTTCCTTAAAGTGTTCAAGACGATCCATTC
66 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTC
* * * * * *
345 CTGCGAGTAATTTTCCAATCATTCAACGCTCATGAAATCGCATCATTTGGTCTAAATAGTTTTTC
131 CTTCGAGCAATTTTCGAA-CATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTTTC
410 ATTTTGTAAA-ATAGTTTTGGT
195 ATTTTGTAAACA-AGTTTTGGT
* * * ** * *
431 CTTTGAATTAAAAACTTGTTTATGTGAGAATT-ATT-TCTCTTGGTTCTTTAACTAACTTTCGAA
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAA
* * * * ** * *
494 ATTGACAAACATTTATGAGTTCTTTTATAACTTCGGTTTATTAAAGTGTTCAACACGATCCATTC
66 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTC
* * * * * **
559 CTTCTAGCAGTTTTACGAACATTCCATTCTCAGTAAATCGCATCATTTGGTCAAAATAGTTTGCC
131 CTTCGAGCAATTTT-CGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTTTC
624 ATTTTGTAAACAAGTTTTGGT
195 ATTTTGTAAACAAGTTTTGGT
*** * * *
645 CTTTGAATTAAAAACTTATTTGTATGAGAATTATTTCTCTCTTGGTTTTTGGACGAACTTCCAAA
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAA
* ** * * * * *
710 CTTGTCAAAATTTGCCAAGTTCATTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCTTTC
66 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTC
* * * * * *
775 CTT-GTAGCAATTTTTCGAACATTCCACGCTCTGGAAATCGCTTCATTCGGTCGAAATAGTTTCT
131 CTTCG-AGCAA-TTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTTT
*
839 CATTTTGTAAACAAGTTTTTGT
194 CATTTTGTAAACAAGTTTTGGT
* * * * * **
861 CTTTCAATTAAAAACTTATCTACGTGAGAATTGTTCCTCTATTAGTTAATGGACGAACTTCC-AA
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAA
* * * * *
925 TCTTGT-AGAAATTTTACGAGTTCTTTTATAACTTCGGTTTCTTAAAGTACTCAAGATGATCCAC
66 -CTTGTCA-AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * *
989 TCTTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCAGTTGGTCTAAA-AATTTT
129 TCCTTCGAGCAA-TTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTT
*
1053 GTAAATTTT-TAAACAAGTTTTGG-
193 -T-CATTTTGTAAACAAGTTTTGGT
* * * *
1076 CTTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACAAAATTCTGA
1 C-TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGA
* * * * ** * *
1141 ACTTGTCAATCTTTTGCGAGTTCTTTTATATCTTTGGTTCCTGCAAGTATTTAAGACGACCCATT
65 ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATT
* * ** * *
1206 CCTTCGAGCAGTTTTTCGAACATTCCATGATC-GAGAAATCTTATCATTCGGACTAAATAGTTTT
130 CCTTCGAGCA-ATTTTCGAACATTCCATGCTCAG-GAAATCGCATCATTTGGTCTAAATAGTTTT
* *
1270 TCATTTTGTAATCAAGTATTGGT
193 TCATTTTGTAAACAAGTTTTGGT
* * * * *
1293 GTTTGTATTAAAAACTTATTTATGTGAGAATTATTTCTCTC-TGTGTTCTTGGACGAACTTTCGA
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTG-GTTCTTGGACGAACTTCCGA
* * * * * * * *
1357 ACTTGTCAAAATCTTACAAGTTCTTTTTTAACATCGGTTCCTTAAAGTCA-TGAAGATGGTCCAT
65 ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGT-ATTCAAGACGATCCAT
** * * * * *
1421 TCCTTTTAGTAGTTTTTCCAACATTCCATGCTC-GAGAAATCG-ATTTATTCGGTCTAAATAGTT
129 TCCTTCGAGCA-ATTTTCGAACATTCCATGCTCAG-GAAATCGCA-TCATTTGGTCTAAATAGTT
*
1484 TTTCATTTT-TAAACTAGTTTTGGT
191 TTTCATTTTGTAAACAAGTTTTGGT
* * * * *
1508 CTTTGAATTAAAATCTTATTTAC-TTAGGAATTGTTTCTCTCTTGGTTGTTGGATGAACTTCCAA
1 CTTTGAATTAAAAACTTATTTACGTGA-GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGA
* * * * *
1572 ACTTGTCAAACTTTTACGAATTCTTTTTTAACTCCGGTTCCTTAAAGTGTTCAAGACTATCCATT
65 ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATT
* * * *
1637 CCTTCGAGTAATTTTCCGAACATTCCAAGC-GAGGGAAATTGCATCATTTGGTCTAAATAGTTTT
130 CCTTCGAGCAATTTT-CGAACATTCCATGCTCA-GGAAATCGCATCATTTGGTCTAAATAGTTTT
* * * *
1701 TCATTCTGCAAATAAGTTTTGAT
193 TCATTTTGTAAACAAGTTTTGGT
* * **
1724 CTTTGAATTAAAAACTTATTTCCTTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTTAA
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAA
* * * * ** *
1789 ATTGACAAACTTTTACGAGTTCTTTTATAACTTTGGTTCATTAAAGTATTCAAGATTATTCATTC
66 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTC
* * * * * * *
1854 CTTCCAGCAGTTTTTCGAACATTCCATTCTCGGGAAATTGCATCATTTGGTCTAAATGGTTTTTT
131 CTTCGAGCA-ATTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTTTC
* **
1919 ATTTTGTAAACAACTTTTTAT
195 ATTTTGTAAACAAGTTTTGGT
* * *
1940 CTTTGAATT-AAAACTTATTTACGTGTGAATTGTGTCTCTCTTGGTTCTTGGACGAACTTCTGAA
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAA
* * ** * *
2004 ATTGTCGAACTTTTACGAGTTCTTTTATAACTTCTATTCCTTAAAGTATTCAAGACGATTCAATC
66 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTC
* ** * * * * *
2069 CTTCGAGCAATTTTTTGAACATTCCATGCTTGGGAAGTCACATCATTTGGTCTAAAAAATTTGTC
131 CTTCGAGCAA-TTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTTTC
* * *
2134 ATTTTATAAACAAGTTTTCGC
195 ATTTTGTAAACAAGTTTTGGT
* * ** * * *
2155 CTTTGAATTAAAAACTTATTCACATGAGAATTGTAGCTCTCTTGGTTCTTGGATGAACTTTCAAA
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAA
* * *
2220 CTTGTCAAACTTTTACGAGTTCTTTTTTAACTTTGGTTCCTTAAAGTGTTCAAGACGATCCATTC
66 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTC
* * * *
2285 CTTCGAGTAATTTTTTGAACATTCAACGCTC-GAGAAATCGCATCATTTGGTCTAAATAGTTTTT
131 CTTCGAGCAA-TTTTCGAACATTCCATGCTCAG-GAAATCGCATCATTTGGTCTAAATAGTTTTT
*
2349 CATTTTGTAAAAAAGTTTTGGT
194 CATTTTGTAAACAAGTTTTGGT
* * * * * *
2371 CTTTGATTTAAAAACTTGTTTGCGTGAGAATTGTTTCTCTCTTGCTTCTTTGATGAACTTCCGAA
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAA
* * * * * * *
2436 ATTGAT-AAACATTTATGAGCTCTTTTATAACTTCGGTTCATTAAAGTGTTCAAGACGATTCATT
66 CTTG-TCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATT
* * * * * *
2500 CCTTCTAGCAGTTTTTTGAACATTCCATTCTC-GAGAAAACGCATCATTTGGTCTAAATAGTTTG
130 CCTTCGAGCA-ATTTTCGAACATTCCATGCTCAG-GAAATCGCATCATTTGGTCTAAATAGTTTT
*
2564 TCATTTTGTAAACAGGTTTTGGT
193 TCATTTTGTAAACAAGTTTTGGT
** * * * * *
2587 CTTTGAATTAAAAACTTATTTATTTGAGAACT-TTTCTCTCTTGGTTTTTCGATGAACTTCTGAA
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAA
** * *
2651 CTTGTCAAACTTTGCCAAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTC
66 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTC
* ** * * * *
2716 CATCGAGCAATTTTTCGAACATTCCACACACTGGAAATTGTATCATTTGGTCTAAATAGTTTTTC
131 CTTCGAGCAA-TTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTTTC
* * *
2781 ATTCTGTAAATAAGTTTTGAT
195 ATTTTGTAAACAAGTTTTGGT
2802 CTTTGAATTAAAAACTTATTTTCATCAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT
1 CTTTG--------A---A--TT-A--AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT
* * * ** * * *
2867 TGGATGAACTTCTGAAATTGAAAAACTTTTACAAGTTCTTTTATAACTTCGGTGCATTAAAGTAT
50 TGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTAT
* * * * * * * * *
2932 CCAAGACAATTCATTCCTTCTAGTAGTTTTTCGAACATTTCATTCT-TGAGAAATCGCATCATTT
115 TCAAGACGATCCATTCCTTCGAGCA-ATTTTCGAACATTCCATGCTCAG-GAAATCGCATCATTT
* *** *
2996 GGTCTAAATAGTTTTTCATTTTGTAAAAAAAAAATTGAT
178 GGTCTAAATAGTTTTTCATTTTGT-AAACAAGTTTTGGT
* * * *
3035 CTTTGAATTAAAAACTTATTTAAGTGAGAACTGTGTCTCTCTTGGTTCTTGGATGAACTT-CGAA
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCG-A
* * * * * * *
3099 AATTGTCGAACTTTTACGAGTTCTTTTATAATTTTGTTTCCTTAAAGTATTCAAGATGATCCAAT
65 ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATT
** * * * * * *
3164 CCTTCGAGCTAATTGCCAAACATTCCACGCTCGGGAAGTCACATCATTTGGTCTAAA-AATTTTG
130 CCTTCGAGC-AATTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTT-
*
3228 TCATTTTGTAAACAAGTTTTGGC
193 TCATTTTGTAAACAAGTTTTGGT
* * *
3251 CTCTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCTGAA
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAA
* * * *
3316 CTTATCGAACTTTTACGAGTTCTTTTTTAACTTCGGTTCCTTAAAGTGTTCAAGACGATCCATTC
66 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTC
* * *
3381 CTTCGAGTAATTTTTCGAACATT-CA-GCGCTAGAGAAATCGCATAATTTTGGTCTAAATAGTTT
131 CTTCGAGCAA-TTTTCGAACATTCCATGCTC-AG-GAAATCGCATCA-TTTGGTCTAAATAGTTT
*
3444 TTCATTTTGTAAA-ATAGTTTTGAT
192 TTCATTTTGTAAACA-AGTTTTGGT
* * * *
3468 CTTTGAATTAAAAACTTGTTTACGTGAGAATTGTTTCTCTCTTAGTTCTTTGACGAACTTCTGAA
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAA
* * * * * * * *
3533 ATTGACAAACATTTATGAGTTCTTTTTTAACTTCGATTCATTAAAGTGTTCAAGACGATCCATTC
66 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTC
* * * * * *
3598 CTTCTAGTAGTTTTTCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTC
131 CTTCGAGCA-ATTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTTTC
*
3663 ATTTAGTAAACAAGTTTTGGT
195 ATTTTGTAAACAAGTTTTGGT
** * *
3684 CTTTGAATTAAAAACTTATTTATTTGAGAATTGTTTCTCTCTTGGTT-TTCGAACGAACTTCCAA
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GGACGAACTTCCGA
* * * * *
3748 ACTTGTCAAAC-TTTGCCAGGTTCTTTTATAACTGCGATTCCTTAAAGTATTCAAGACGATTCAT
65 ACTTGTCAAACTTTTACGA-GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
* ** ** * * * *
3812 TCCTTCGAGCAATTTTTTGAACATTCCACACTTTGGAAATTGCATCATTCGATCTAAATAGTTTC
129 TCCTTCGAGCAA-TTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTT
*
3877 TCATTTTGTAATCAAGTTTTGGT
193 TCATTTTGTAAACAAGTTTTGGT
* * * * * * ** *
3900 CTTTCAATTAAAAACTTATTCACGTGAGAATTATTCCTCTATTTGTTCAGGGATGAACTTCC-AA
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAA
* * * * * * * *
3964 TCTTGT-AGAAATTCTACAAGTTCTTTTATAACTTCGATTCCTTAGAGTTTTCAAGATGATCCAC
66 -CTTGTCA-AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * * * * * *
4028 ACTTTTGAGCAGTTTTTCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA-A-ATTG
129 TCCTTCGAGCA-ATTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTT
*
4091 TCATTTT-TCAAACAAGTTTTGGC
193 TCATTTTGT-AAACAAGTTTTGGT
* * * * *
4114 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTCGGCTCTTGGACAAAATTCTGAA
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAA
* * * *
4179 CTTGTCAAACTTTTACGAGTTCTTTTATATCTTTGGTTCCTTCAAGTATTCAAGAGGATCCATTC
66 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTC
** * * * *
4244 CTTTAAGCAGTTTTTCGAACATTCCATGCTCTGGAAATTGCATCATTCGGTCTAAATAGTTTTTC
131 CTTCGAGCA-ATTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTTTC
*
4309 ATTTTGTAATCAAGTTTTGGT
195 ATTTTGTAAACAAGTTTTGGT
* * * * *
4330 GTTT-ATATTAAAAACTTATTTATGTGAGAATTATTTCT-TGCTTTGTTCTTGGACGAACTTTCG
1 CTTTGA-ATTAAAAACTTATTTACGTGAGAATTGTTTCTCT-CTTGGTTCTTGGACGAACTTCCG
* * * * * * *
4393 AA-TTATCAAAATTTTACAAGTTCTTTTTTTACTTTGGTTCCTTAAAGTATTCAAGACGGTCCAT
64 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
** *** * * *
4457 TCCTTTTAGTTGTTTTTCCAACATTCCATTCTCAGGAAAACGCATCATTTGGTCTAAATAGTTTT
129 TCCTTCGAG-CAATTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTT
*
4522 TCATTTTGTAAGCAAGTTTTGGT
193 TCATTTTGTAAACAAGTTTTGGT
* * * * * *
4545 CTTTGAATTAAAAACTTATTTACGTGACAATTGCTTCTCCCTTGGTTGTTGGACAAACTTCCAAA
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAA
* * * * *
4610 CTTGTAAAACTTTTACGAGTTCTTTTTTAACTCCGGTTCCTTACAGTGTTCAAGACGATCCATTC
66 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTC
* * * * *
4675 CTTCTAGTAATTTTCCGAACATTCCATGC-GAGGGAAATTGCATCATTTAGTCTAAATAGTTTTT
131 CTTCGAGCAATTTT-CGAACATTCCATGCTCA-GGAAATCGCATCATTTGGTCTAAATAGTTTTT
* * *
4739 CATTGTGTAAACATGTTTTGAT
194 CATTTTGTAAACAAGTTTTGGT
* * * *
4761 CTTTGAATTAGAAACTTATTTACATGAGATTTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAA
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAA
* * * * * *
4826 ATTGACAAACTTTTACGAGTTCCTTTATAACTTCGGTTCATTAAAGTATTCAAGACAATTCATTC
66 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTC
* **
4891 CTTCTAGCTGTTTTTCGAACATTCC
131 CTTCGAGC-AATTTTCGAACATTCC
4916 TGATACTATA
Statistics
Matches: 3887, Mismatches: 710, Indels: 206
0.81 0.15 0.04
Matches are distributed among these distances:
213 1 0.00
214 383 0.10
215 743 0.19
216 2197 0.57
217 364 0.09
218 10 0.00
219 3 0.00
220 2 0.00
222 1 0.00
223 1 0.00
225 1 0.00
226 1 0.00
228 2 0.00
229 1 0.00
231 21 0.01
232 141 0.04
233 15 0.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.41
Consensus pattern (215 bp):
CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAA
CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTC
CTTCGAGCAATTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTTTCA
TTTTGTAAACAAGTTTTGGT
Found at i:413 original size:21 final size:20
Alignment explanation
Indices: 387--427 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
377 TGAAATCGCA
*
387 TCATTTGGTCTAAATAGTTTT
1 TCATTTGGT-AAAATAGTTTT
*
408 TCATTTTGTAAAATAGTTTT
1 TCATTTGGTAAAATAGTTTT
428 GGTCTTTGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.27, C:0.07, G:0.12, T:0.54
Consensus pattern (20 bp):
TCATTTGGTAAAATAGTTTT
Found at i:1695 original size:431 final size:431
Alignment explanation
Indices: 1--4915 Score: 5130
Period size: 431 Copynumber: 11.4 Consensus size: 431
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTG--TCTCTCTTGGTTCTTGGACGAACTTCTGAA
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-GAA
* * * * *
64 ATTGTCGAACTTTTACGAGTTATTTTATAACTTCGGTTCCTTAAAGTATTCAAGACAATCCAATC
65 ATTGTCAAAATTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTC
* * * * * * *
129 CTTCAAGCAATTTTTCAAACATTCCATGCTCGGGAAGTCGCATAATTTTGTCTAAAAAGTTTGTT
130 CTTCTAGCAGTTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT-TT
* * **
194 -ATTTTGTAAACAAATTTTGGCCTTTGAATTAAAAACTTATTTTTGTGAGAATTGTTTCTCTCTT
194 CATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
* * * * ** * **
258 GGTTGTTAGACAAACTTCCGAACTCATCAAACTTTTACGAGTTCTTTTTTAACTTTTGTTCCTTA
259 GGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* * * * *
323 AAGTGTTCAAGACGATCCATTCCTGCGAGTAA-TTTTCCAATCATT-CAACGCTCA-TGAAATCG
324 AAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAA-CATTCCAA-GCT-AGGGAAATCG
385 CATCATTTGGTCTAAATAGTTTTTCATTTTGTAAA-ATAGTTTTGGT
386 CATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACA-AGTTTTGGT
* * * ** *
431 CTTTGAATTAAAAACTTGTTTATGTGAGAATT-ATT-TCTCTTGGTTCTTTAACTAACTTTCGAA
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAA
* * ** * *
494 ATTGACAAACA-TTTATGAGTTCTTTTATAACTTCGGTTTATTAAAGTGTTCAACACGATCCATT
65 ATTGTCAAA-ATTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATT
* * * * * **
558 CCTTCTAGCAGTTTTACGAACATTCCATTCTCAGTAAATCGCATCATTTGGTCAAAATAGTTTGC
129 CCTTCTAGCAGTTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTT
*** *
623 CATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTGTATGAGAATTATTTCTCTCTT
194 CATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
* * ** * * *
688 GGTTTTTGGACGAACTTCCAAACTTGTCAAAATTTGCCAAGTTCATTTATAACTTCGATTCCTTA
259 GGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* * * ** *
753 AAGTATTCAAGATGATCCTTTCCTT-GTAGCAATTTTTCGAACATTCCACGCTCTGGAAATCGCT
324 AAGTATTCAAGACGATCCATTCCTTCG-AGCAATTTTTCGAACATTCCAAGCTAGGGAAATCGCA
* * * *
817 TCATTCGGTCGAAATAGTTTCTCATTTTGTAAACAAGTTTTTGT
388 TCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGT
* * * * * ** *
861 CTTTCAATTAAAAACTTATCTACGTGAGAATTGTTCCTCTATTAGTTAATGGACGAACTTCCAAT
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCGAA-
* * * * *
926 CTTGT-AGAAATTTTACGAGTTCTTTTATAACTTCGGTTTCTTAAAGTACTCAAGATGATCCACT
65 ATTGTCA-AAATTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATT
* * * * *
990 CTTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCAGTTGGTCTAAA-AATTTTG
129 CCTTCTAGCAGTTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTT-
*
1054 TAAATTTT-TAAACAAGTTTTGG-CTTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
193 T-CATTTTGTAAACAAGTTTTGGTC-TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* * * ** * * * *
1117 CTTGGCTCTTGGACAAAATTCTGAACTTGTCAATCTTTTGCGAGTTCTTTTATATCTTTGGTTCC
256 CTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
** * * * * * * * *
1182 TGCAAGTATTTAAGACGACCCATTCCTTCGAGCAGTTTTTCGAACATTCCATGATCGAGAAATCT
321 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCAAGCTAGGGAAATCG
* * * * *
1247 TATCATTCGGACTAAATAGTTTTTCATTTTGTAATCAAGTATTGGT
386 CATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGT
* * * *
1293 GTTTGTATTAAAAACTTATTTATGTGAGAATTATTTCTCTC-TGTGTTCTTGGACGAACTTTCGA
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTG-GTTCTTGGACGAAC-TTCGA
* * * * * * * *
1357 ACTTGTCAAAATCTTACAAGTTCTTTTTTAACATCGGTTCCTTAAAGTCA-TGAAGATGGTCCAT
64 AATTGTCAAAATTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGT-ATTCAAGACGATCCAT
* * * * * *
1421 TCCTTTTAGTAGTTTTTCCAACATTCCATGCTCGAGAAATCG-ATTTATTCGGTCTAAATAGTTT
128 TCCTTCTAGCAGTTTTTCGAACATTCCATGCTCGGGAAATCGCA-TCATTTGGTCTAAATAGTTT
* * *
1485 TTCATTTT-TAAACTAGTTTTGGTCTTTGAATTAAAATCTTATTTAC-TTAGGAATTGTTTCTCT
192 TTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA-GAATTGTTTCTCT
* * * * *
1548 CTTGGTTGTTGGATGAACTTCCAAACTTGTCAAACTTTTACGAATTCTTTTTTAACTCCGGTTCC
256 CTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
* * * * * *
1613 TTAAAGTGTTCAAGACTATCCATTCCTTCGAGTAATTTTCCGAACATTCCAAGCGAGGGAAATTG
321 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCAAGCTAGGGAAATCG
* * * *
1678 CATCATTTGGTCTAAATAGTTTTTCATTCTGCAAATAAGTTTTGAT
386 CATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGT
* * *
1724 CTTTGAATTAAAAACTTATTTCCTTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTTAA
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-GAA
* * * * ** *
1789 ATTGACAAACTTTTACGAGTTCTTTTATAACTTTGGTTCATTAAAGTATTCAAGATTATTCATTC
65 ATTGTCAAAATTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTC
* * * * *
1854 CTTCCAGCAGTTTTTCGAACATTCCATTCTCGGGAAATTGCATCATTTGGTCTAAATGGTTTTTT
130 CTTCTAGCAGTTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTC
* ** * *
1919 ATTTTGTAAACAACTTTTTATCTTTGAATT-AAAACTTATTTACGTGTGAATTGTGTCTCTCTTG
195 ATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTG
* * **
1983 GTTCTTGGACGAACTTCTGAAA-TTGTCGAACTTTTACGAGTTCTTTTATAACTTCTATTCCTTA
260 GTTCTTGGACGAACTTC-CAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* * * * * * *
2047 AAGTATTCAAGACGATTCAATCCTTCGAGCAATTTTTTGAACATTCCATGCTTGGGAAGTCACAT
324 AAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCAAGCTAGGGAAATCGCAT
* * * * * *
2112 CATTTGGTCTAAAAAATTTGTCATTTTATAAACAAGTTTTCGC
389 CATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGT
* * ** *
2155 CTTTGAATTAAAAACTTATTCACATGAGAATTGTAGCTCTCTTGGTTCTTGGATGAACTTTC-AA
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAA
* * * *
2219 ACTTGTCAAACTTTTACGAGTTCTTTTTTAACTTTGGTTCCTTAAAGTGTTCAAGACGATCCATT
65 A-TTGTCAAAATTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATT
* * * * * * *
2284 CCTTCGAGTAATTTTTTGAACATTCAACGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTTT
129 CCTTCTAGCAGTTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTT
* * * *
2349 CATTTTGTAAAAAAGTTTTGGTCTTTGATTTAAAAACTTGTTTGCGTGAGAATTGTTTCTCTCTT
194 CATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
* * * * * * *
2414 GCTTCTTTGATGAACTTCCGAAA-TTGAT-AAACATTTATGAGCTCTTTTATAACTTCGGTTCAT
259 GGTTCTTGGACGAACTTCC-AAACTTG-TCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT
* * * * * ** * * *
2477 TAAAGTGTTCAAGACGATTCATTCCTTCTAGCAGTTTTTTGAACATTCCATTCTCGAGAAAACGC
322 TAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCAAGCTAGGGAAATCGC
* *
2542 ATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAGGTTTTGGT
387 ATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGT
** * * * *
2587 CTTTGAATTAAAAACTTATTTATTTGAGAACT-TTTCTCTCTTGGTTTTTCGATGAACTTCTGAA
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-GAA
* * ** * *
2651 CTTGTCAAACTTTGCCAAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTC
65 ATTGTCAAAATTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTC
* * * ** * * * *
2716 CATCGAGCAATTTTTCGAACATTCCACACACTGGAAATTGTATCATTTGGTCTAAATAGTTTTTC
130 CTTCTAGCAGTTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTC
* * *
2781 ATTCTGTAAATAAGTTTTGATCTTTGAATTAAAAACTTATTTTCATCAAAACTTATTTACGTGAG
195 ATTTTGTAAACAAGTTTTGGTCTTTG--------A---A--TT-A--AAAACTTATTTACGTGAG
* * ** *
2846 AATTGTTTCTCTCTTGGTTCTTGGATGAACTTCTGAAA-TTGAAAAACTTTTACAAGTTCTTTTA
244 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-CAAACTTGTCAAACTTTTACGAGTTCTTTTA
* * * * * * * * * *
2910 TAACTTCGGTGCATTAAAGTATCCAAGACAATTCATTCCTTCTAGTAGTTTTTCGAACATTTCAT
308 TAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCAA
* * * * *** *
2975 TCTTGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAAAAAAAAATTGAT
373 GCTAGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGT-AAACAAGTTTTGGT
* * * *
3035 CTTTGAATTAAAAACTTATTTAAGTGAGAACTGTGTCTCTCTTGGTTCTTGGATGAACTTCGAAA
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCG-AA
* * * * * * *
3100 ATTGTCGAACTTTTACGAGTTCTTTTATAATTTTGTTTCCTTAAAGTATTCAAGATGATCCAATC
65 ATTGTCAAAATTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTC
* * ** * * * * *
3165 CTTCGAGCTA-ATTGCCAAACATTCCACGCTCGGGAAGTCACATCATTTGGTCTAAA-AATTTTG
130 CTTCTAGC-AGTTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTT-
* *
3228 TCATTTTGTAAACAAGTTTTGGCCTCTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
193 TCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
* ** * * *
3293 TGGTTGTTGGACGAACTTCTGAACTTATCGAACTTTTACGAGTTCTTTTTTAACTTCGGTTCCTT
258 TGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT
* * * *
3358 AAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTTCGAACATT-CAGCGCTAGAGAAATCGC
323 AAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCA-AGCTAGGGAAATCGC
* *
3422 ATAATTTTGGTCTAAATAGTTTTTCATTTTGTAAA-ATAGTTTTGAT
387 ATCA-TTTGGTCTAAATAGTTTTTCATTTTGTAAACA-AGTTTTGGT
* * *
3468 CTTTGAATTAAAAACTTGTTTACGTGAGAATTGTTTCTCTCTTAGTTCTTTGACGAACTTCTGAA
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-GAA
* * * * * *
3533 ATTGACAAACA-TTTATGAGTTCTTTTTTAACTTCGATTCATTAAAGTGTTCAAGACGATCCATT
65 ATTGTCAAA-ATTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATT
* * *
3597 CCTTCTAGTAGTTTTTCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGT
129 CCTTCTAGCAGTTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTT
* **
3662 CATTTAGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTATTTGAGAATTGTTTCTCTCTT
194 CATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
* * * * *
3727 GGTT-TTCGAACGAACTTCCAAACTTGTCAAAC-TTTGCCAGGTTCTTTTATAACTGCGATTCCT
259 GGTTCTT-GGACGAACTTCCAAACTTGTCAAACTTTTACGA-GTTCTTTTATAACTTCGGTTCCT
* * ** *
3790 TAAAGTATTCAAGACGATTCATTCCTTCGAGCAATTTTTTGAACATTCCACA-CTTTGGAAATTG
322 TAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCA-AGCTAGGGAAATCG
* * * *
3854 CATCATTCGATCTAAATAGTTTCTCATTTTGTAATCAAGTTTTGGT
386 CATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGT
* * * * * * ** * *
3900 CTTTCAATTAAAAACTTATTCACGTGAGAATTATTCCTCTATTTGTTCAGGGATGAACTTCCAAT
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCGAA-
* * * * * * *
3965 CTTGT-AGAAATTCTACAAGTTCTTTTATAACTTCGATTCCTTAGAGTTTTCAAGATGATCCA--
65 ATTGTCA-AAATTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATT
* * *
4027 CACTTTTGAGCAGTTTTTCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA-A-ATT
129 C-CTTCT-AGCAGTTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
* *
4090 GTCATTTT-TCAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
192 TTCATTTTGT-AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* * * * ** * *
4154 CTCGGCTCTTGGACAAAATTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATATCTTTGGTTCC
256 CTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
* * ** * * ** *
4219 TTCAAGTATTCAAGAGGATCCATTCCTTTAAGCAGTTTTTCGAACATTCCATGCTCTGGAAATTG
321 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCAAGCTAGGGAAATCG
* *
4284 CATCATTCGGTCTAAATAGTTTTTCATTTTGTAATCAAGTTTTGGT
386 CATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGT
* * * *
4330 GTTT-ATATTAAAAACTTATTTATGTGAGAATTATTTCT-TGCTTTGTTCTTGGACGAACTTTCG
1 CTTTGA-ATTAAAAACTTATTTACGTGAGAATTGTTTCTCT-CTTGGTTCTTGGACGAAC-TTCG
* * * * * *
4393 -AATTATCAAAATTTTACAAGTTCTTTTTTTACTTTGGTTCCTTAAAGTATTCAAGACGGTCCAT
63 AAATTGTCAAAATTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
* ** * * * *
4457 TCCTTTTAGTTGTTTTTCCAACATTCCATTCTCAGGAAAACGCATCATTTGGTCTAAATAGTTTT
128 TCCTTCTAGCAGTTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTT
* * * *
4522 TCATTTTGTAAGCAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGACAATTGCTTCTCCCT
193 TCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
* * * * *
4587 TGGTTGTTGGACAAACTTCCAAACTTGTAAAACTTTTACGAGTTCTTTTTTAACTCCGGTTCCTT
258 TGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT
* * * * * * * *
4652 ACAGTGTTCAAGACGATCCATTCCTTCTAGTAATTTTCCGAACATTCCATGCGAGGGAAATTGCA
323 AAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCAAGCTAGGGAAATCGCA
* * * *
4717 TCATTTAGTCTAAATAGTTTTTCATTGTGTAAACATGTTTTGAT
388 TCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGT
* * *
4761 CTTTGAATTAGAAACTTATTTACATGAGATTTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAA
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-GAA
* * * * * *
4826 ATTGACAAACTTTTACGAGTTCCTTTATAACTTCGGTTCATTAAAGTATTCAAGACAATTCATTC
65 ATTGTCAAAATTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTC
*
4891 CTTCTAGCTGTTTTTCGAACATTCC
130 CTTCTAGCAGTTTTTCGAACATTCC
4916 TGATACTATA
Statistics
Matches: 3728, Mismatches: 659, Indels: 194
0.81 0.14 0.04
Matches are distributed among these distances:
429 98 0.03
430 641 0.17
431 1157 0.31
432 949 0.25
433 478 0.13
434 34 0.01
435 1 0.00
436 2 0.00
438 1 0.00
439 1 0.00
441 1 0.00
444 2 0.00
445 1 0.00
447 170 0.05
448 44 0.01
449 147 0.04
450 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.41
Consensus pattern (431 bp):
CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCGAAA
TTGTCAAAATTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCC
TTCTAGCAGTTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCA
TTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGG
TTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAA
GTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCAAGCTAGGGAAATCGCATCA
TTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGT
Found at i:1855 original size:647 final size:649
Alignment explanation
Indices: 1--4915 Score: 5154
Period size: 647 Copynumber: 7.6 Consensus size: 649
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTG--TCTCTCTTGGTTCTTGGACGAACTTCTGAA
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAA
* * * * * * * *
64 ATTGTCGAACTTTTACGAGTTATTTTATAACTTCGGTTCCTTAAAGTATTCAAGACAATCCAATC
66 CTTGTCAAAATTTTACAAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTC
* * * * * *
129 CTTCAAGCAATTTTTCAAACATTCCATGCTCGGGAAGTCGCA-TAATTTTGTCTAAAAAGTTTGT
131 CTTCTAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATTCATTTGGTCTAAATAGTTT-T
* * **
193 T-ATTTTGTAAACAAATTTTGGCCTTTGAATTAAAAACTTATTTTTGTGAGAATTGTTTCTCTCT
195 TCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
* * * * ** * **
257 TGGTTGTTAGACAAACTTCCGAACTCATCAAACTTTTACGAGTTCTTTTTTAACTTTTGTTCCTT
260 TGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT
* * * * * **
322 AAAGTGTTCAAGACGATCCATTCCTGCGAGTAA-TTTTCCAATCATTCAACGCTCATGAAATCGC
325 AAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTTCGAA-CATTCCATGCTCGGGAAATCGC
* *
386 ATCATTTGGTCTAAATAGTTTTTCATTTTGTAAAATAGTTTTGGTCTTTGAATTAAAAACTTGTT
389 ATCATTTGGTCTAAATAGTTTTTCATTTTGTAAAAAAGTTTTGGTCTTTGAATTAAAAACTTATT
* ** * * *
451 T-ATGTGAGAATT-ATT-TCTCTTGGTTCTTTAACTAACTT-TCGAAATTGACAAACATTTATGA
454 TAAT-TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-GAAATTGACAAACTTTTACGA
* ** * * * *
512 GTTCTTTTATAACTTCGGTTTATTAAAGTGTTCAACACGATCCATTCCTTCTAGCAGTTTTACGA
517 GTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAGTTTTTCGA
* **
577 ACATTCCATTCTC-AGTAAATCGCATCATTTGGTCAAAATAGTTTGCCATTTTGTAAACAAGTTT
582 ACATTCCATTCTCGAG-AAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTT
641 TGGT
646 TGGT
*** * * **
645 CTTTGAATTAAAAACTTATTTGTATGAGAATTATTTCTCTCTTGGTTTTTGGACGAACTTCCAAA
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAA
** * * *
710 CTTGTCAAAATTTGCCAAGTTCATTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCTTTC
66 CTTGTCAAAATTTTACAAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTC
* * * * * *
775 CTTGTAGCAATTTTTCGAACATTCCACGCTCTGGAAATCGC-TTCATTCGGTCGAAATAGTTTCT
131 CTTCTAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATTCATTTGGTCTAAATAGTTTTT
* * * * *
839 CATTTTGTAAACAAGTTTTTGTCTTTCAATTAAAAACTTATCTACGTGAGAATTGTTCCTCTATT
196 CATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
* ** * * *
904 AGTTAATGGACGAACTTCCAATCTTGT-AGAAATTTTACGAGTTCTTTTATAACTTCGGTTTCTT
261 GGTTCTTGGACGAACTTCCAAACTTGTCA-AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT
* * * * *
968 AAAGTACTCAAGATGATCCACTCTTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCA
325 AAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTTCGAACATTCCATGCTCGGGAAATCGCA
* * * *
1033 TCAGTTGGTCTAAA-AATTTTGTAAATTTT-TAAACAAGTTTTGG-CTTTTGAATTAAAAACTTA
390 TCATTTGGTCTAAATAGTTTT-T-CATTTTGTAAAAAAGTTTTGGTC-TTTGAATTAAAAACTTA
** * * * * * * *
1095 TTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACAAAATTCTGAACTTGTCAATCTTTTGCGA
452 TTTAATTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAAATTGACAAACTTTTACGA
* ** * *
1160 GTTCTTTTATATCTTTGGTTCCTGCAAGTATTTAAGACGACCCATTCCTTCGAGCAGTTTTTCGA
517 GTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAGTTTTTCGA
** ** * * * *
1225 ACATTCCATGATCGAGAAATCTTATCATTCGGACTAAATAGTTTTTCATTTTGTAATCAAGTATT
582 ACATTCCATTCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTT
1290 GGT
647 GGT
* * * *
1293 GTTTGTATTAAAAACTTATTTATGTGAGAATTATTTCTCTC-TGTGTTCTTGGACGAACTT-TCG
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTG-GTTCTTGGACGAACTTCT-G
* * * * * * *
1356 AACTTGTCAAAATCTTACAAGTTCTTTTTTAACATCGGTTCCTTAAAGTCA-TGAAGATGGTCCA
64 AACTTGTCAAAATTTTACAAGTTCTTTTATAACTTCGATTCCTTAAAGT-ATTCAAGACGATCCA
* * * * * * *
1420 TTCCTTTTAGTAGTTTTTCCAACATTCCATGCTCGAGAAATCG-ATTTATTCGGTCTAAATAGTT
128 TTCCTTCTAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATTCATTTGGTCTAAATAGTT
* * *
1484 TTTCATTTT-TAAACTAGTTTTGGTCTTTGAATTAAAATCTTATTTAC-TTAGGAATTGTTTCTC
193 TTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA-GAATTGTTTCTC
* * * * *
1547 TCTTGGTTGTTGGATGAACTTCCAAACTTGTCAAACTTTTACGAATTCTTTTTTAACTCCGGTTC
257 TCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* * * * ** *
1612 CTTAAAGTGTTCAAGACTATCCATTCCTTCGAGTAATTTTCCGAACATTCCAAGCGAGGGAAATT
322 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTTCGAACATTCCATGCTCGGGAAATC
* * * *
1677 GCATCATTTGGTCTAAATAGTTTTTCATTCTGCAAATAAGTTTTGATCTTTGAATTAAAAACTTA
387 GCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAAAAAGTTTTGGTCTTTGAATTAAAAACTTA
** *
1742 TTTCCTTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTTAAATTGACAAACTTTTACGA
452 TTTAATTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAAATTGACAAACTTTTACGA
* ** * *
1807 GTTCTTTTATAACTTTGGTTCATTAAAGTATTCAAGATTATTCATTCCTTCCAGCAGTTTTTCGA
517 GTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAGTTTTTCGA
* * * * *
1872 ACATTCCATTCTCGGGAAATTGCATCATTTGGTCTAAATGGTTTTTTATTTTGTAAACAACTTTT
582 ACATTCCATTCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTT
**
1937 TAT
647 GGT
* *
1940 CTTTGAATT-AAAACTTATTTACGTGTGAATTGTGTCTCTCTTGGTTCTTGGACGAACTTCTGAA
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAA
* * * * * * *
2004 ATTGTCGAACTTTTACGAGTTCTTTTATAACTTCTATTCCTTAAAGTATTCAAGACGATTCAATC
66 CTTGTCAAAATTTTACAAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTC
* * * * * * * *
2069 CTTCGAGCAATTTTTTGAACATTCCATGCTTGGGAAGTCACA-TCATTTGGTCTAAAAAATTTGT
131 CTTCTAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATTCATTTGGTCTAAATAGTTTTT
* * * * * **
2133 CATTTTATAAACAAGTTTTCGCCTTTGAATTAAAAACTTATTCACATGAGAATTGTAGCTCTCTT
196 CATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
* * * *
2198 GGTTCTTGGATGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTTTAACTTTGGTTCCTTA
261 GGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* * * * *
2263 AAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTTTGAACATTCAACGCTCGAGAAATCGCAT
326 AAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTTCGAACATTCCATGCTCGGGAAATCGCAT
* * *
2328 CATTTGGTCTAAATAGTTTTTCATTTTGTAAAAAAGTTTTGGTCTTTGATTTAAAAACTTGTTTG
391 CATTTGGTCTAAATAGTTTTTCATTTTGTAAAAAAGTTTTGGTCTTTGAATTAAAAACTTATTTA
** * * * * * * * *
2393 CGTGAGAATTGTTTCTCTCTTGCTTCTTTGATGAACTTCCGAAATTGATAAACATTTATGAGCTC
456 ATTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAAATTGACAAACTTTTACGAGTTC
* * * * * *
2458 TTTTATAACTTCGGTTCATTAAAGTGTTCAAGACGATTCATTCCTTCTAGCAGTTTTTTGAACAT
521 TTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAGTTTTTCGAACAT
* * *
2523 TCCATTCTCGAGAAAACGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAGGTTTTGGT
586 TCCATTCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGT
** * * * *
2587 CTTTGAATTAAAAACTTATTTATTTGAGAACT-TTTCTCTCTTGGTTTTTCGATGAACTTCTGAA
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAA
* **
2651 CTTGTCAAACTTTGCCAAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTC
66 CTTGTCAAAATTTTACAAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTC
* * ** * * * *
2716 CATCGAGCAATTTTTCGAACATTCCACACACTGGAAATTGTA-TCATTTGGTCTAAATAGTTTTT
131 CTTCTAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATTCATTTGGTCTAAATAGTTTTT
* * *
2780 CATTCTGTAAATAAGTTTTGATCTTTGAATTAAAAACTTATTTTCATCAAAACTTATTTACGTGA
196 CATTTTGTAAACAAGTTTTGGTCTTTG--------A---A--TT-A--AAAACTTATTTACGTGA
* * ** *
2845 GAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCTGAAA-TTGAAAAACTTTTACAAGTTCTTTT
245 GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-CAAACTTGTCAAACTTTTACGAGTTCTTTT
* * * * * * * *
2909 ATAACTTCGGTGCATTAAAGTATCCAAGACAATTCATTCCTTCTAGTAGTTTTTCGAACATTTCA
309 ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTTCGAACATTCCA
* * * *** *
2974 TTCTTGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAAAAAAAAATTGATCTTT
374 TGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGT-AAAAAAGTTTTGGTCTTT
* * * *
3039 GAATTAAAAACTTATTTAAGTGAGAACTGTGTCTCTCTTGGTTCTTGGATGAACTTC-GAAAATT
438 GAATTAAAAACTTATTTAATTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTG-AAATT
* * * * * *
3103 GTCGAACTTTTACGAGTTCTTTTATAATTTTGTTTCCTTAAAGTATTCAAGATGATCCAATCCTT
502 GACAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTT
* ** * ** * * * *
3168 CGAGCTA-ATTGCCAAACATTCCACGCTCGGGAAGTCACATCATTTGGTCTAAA-AATTTTGTCA
567 CGAGC-AGTTTTTCGAACATTCCATTCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTT-TCA
*
3231 TTTTGTAAACAAGTTTTGGC
630 TTTTGTAAACAAGTTTTGGT
* *
3251 CTCTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCTGAA
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAA
* * * * * * *
3316 CTTATCGAACTTTTACGAGTTCTTTTTTAACTTCGGTTCCTTAAAGTGTTCAAGACGATCCATTC
66 CTTGTCAAAATTTTACAAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTC
* * * * * *
3381 CTTCGAGTAATTTTTCGAACATT-CAGCGCTAGAGAAATCGCA-TAATTTTGGTCTAAATAGTTT
131 CTTCTAGCAATTTTTCGAACATTCCA-TGCTCGGGAAATCGCATTCA-TTTGGTCTAAATAGTTT
* *
3444 TTCATTTTGTAAA-ATAGTTTTGATCTTTGAATTAAAAACTTGTTTACGTGAGAATTGTTTCTCT
194 TTCATTTTGTAAACA-AGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* * * * * * * *
3508 CTTAGTTCTTTGACGAACTTCTGAAA-TTGACAAACATTTATGAGTTCTTTTTTAACTTCGATTC
258 CTTGGTTCTTGGACGAACTTC-CAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* * * * *
3572 ATTAAAGTGTTCAAGACGATCCATTCCTTCTAGTAGTTTTTCGAACATTCCATTCTCGGGAAATC
322 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTTCGAACATTCCATGCTCGGGAAATC
* * *
3637 GCATCATTTGGTCTAAATAGTTTGTCATTTAGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTA
387 GCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAAAAAGTTTTGGTCTTTGAATTAAAAACTTA
* * * * *
3702 TTTATTTGAGAATTGTTTCTCTCTTGGTT-TTCGAACGAACTTC-CAAACTTGTCAAAC-TTTGC
452 TTTAATTGAGAATTGTTTCTCTCTTGGTTCTT-GGACGAACTTCTGAAA-TTGACAAACTTTTAC
* ** * * *
3764 CAGGTTCTTTTATAACTGCGATTCCTTAAAGTATTCAAGACGATTCATTCCTTCGAGCAATTTTT
515 GA-GTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAGTTTTT
* ** * * * * * *
3829 TGAACATTCCACACTTTG-GAAATTGCATCATTCGATCTAAATAGTTTCTCATTTTGTAATCAAG
579 CGAACATTCCATTC-TCGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAG
3893 TTTTGGT
643 TTTTGGT
* * * * * * ** * *
3900 CTTTCAATTAAAAACTTATTCACGTGAGAATTATTCCTCTATTTGTTCAGGGATGAACTTC-CAA
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAA
* * * *
3964 TCTTGT-AGAAATTCTACAAGTTCTTTTATAACTTCGATTCCTTAGAGTTTTCAAGATGATCCA-
66 -CTTGTCA-AAATTTTACAAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCAT
* * * *
4027 -CACTTTTGAGCAGTTTTTCAAACATTCCATGCTCGGGAAATCGCA-TCATTTGGTCTAAA-A-A
129 TC-CTTCT-AGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATTCATTTGGTCTAAATAGT
* *
4088 TTGTCATTTT-TCAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
192 TTTTCATTTTGT-AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
* * * * ** * *
4152 CTCTCGGCTCTTGGACAAAATTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATATCTTTGGTT
256 CTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
* * ** * * *
4217 CCTTCAAGTATTCAAGAGGATCCATTCCTTTAAGCAGTTTTTCGAACATTCCATGCTCTGGAAAT
321 CCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTTCGAACATTCCATGCTCGGGAAAT
* * ** *
4282 TGCATCATTCGGTCTAAATAGTTTTTCATTTTGTAATCAAGTTTTGGTGTTT-ATATTAAAAACT
386 CGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAAAAAGTTTTGGTCTTTGA-ATTAAAAACT
* * *
4346 TATTT-ATGTGAGAATTATTTCT-TGCTTTGTTCTTGGACGAACTT-TCG-AATT-ATCAAAATT
450 TATTTAAT-TGAGAATTGTTTCTCT-CTTGGTTCTTGGACGAACTTCT-GAAATTGA-CAAACTT
* * * * ** **
4406 TTACAAGTTCTTTTTTTACTTTGGTTCCTTAAAGTATTCAAGACGGTCCATTCCTTTTAGTTGTT
511 TTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAGTT
* * *
4471 TTTCCAACATTCCATTCTC-AGGAAAACGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAGC
576 TTTCGAACATTCCATTCTCGA-GAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAAC
4535 AAGTTTTGGT
640 AAGTTTTGGT
* * * * * **
4545 CTTTGAATTAAAAACTTATTTACGTGACAATTGCTTCTCCCTTGGTTGTTGGACAAACTTCCAAA
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAA
* * * * * *
4610 CTTGT-AAAACTTTTACGAGTTCTTTTTTAACTCCGGTTCCTTACAGTGTTCAAGACGATCCATT
66 CTTGTCAAAA-TTTTACAAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATT
* * ** * *
4674 CCTTCTAGTAATTTTCCGAACATTCCATGCGAGGGAAATTGCA-TCATTTAGTCTAAATAGTTTT
130 CCTTCTAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATTCATTTGGTCTAAATAGTTTT
* * * * * *
4738 TCATTGTGTAAACATGTTTTGATCTTTGAATTAGAAACTTATTTACATGAGATTTGTTTCTCTCT
195 TCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
* * * *
4803 TGGTTCTTGGACGAACTTCTGAAA-TTGACAAACTTTTACGAGTTCCTTTATAACTTCGGTTCAT
260 TGGTTCTTGGACGAACTTC-CAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT
* * * *
4867 TAAAGTATTCAAGACAATTCATTCCTTCTAGCT-GTTTTTCGAACATTCC
324 TAAAGTATTCAAGACGATCCATTCCTTCGAG-TAATTTTTCGAACATTCC
4916 TGATACTATA
Statistics
Matches: 3540, Mismatches: 643, Indels: 173
0.81 0.15 0.04
Matches are distributed among these distances:
644 33 0.01
645 268 0.08
646 746 0.21
647 1093 0.31
648 363 0.10
649 304 0.09
650 180 0.05
652 1 0.00
653 2 0.00
655 2 0.00
658 2 0.00
660 2 0.00
661 1 0.00
663 168 0.05
664 212 0.06
665 120 0.03
666 43 0.01
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.41
Consensus pattern (649 bp):
CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAA
CTTGTCAAAATTTTACAAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTC
CTTCTAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATTCATTTGGTCTAAATAGTTTTT
CATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
GGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
AAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTTCGAACATTCCATGCTCGGGAAATCGCAT
CATTTGGTCTAAATAGTTTTTCATTTTGTAAAAAAGTTTTGGTCTTTGAATTAAAAACTTATTTA
ATTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAAATTGACAAACTTTTACGAGTTC
TTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAGTTTTTCGAACAT
TCCATTCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGT
Found at i:9310 original size:216 final size:216
Alignment explanation
Indices: 8926--10870 Score: 2244
Period size: 216 Copynumber: 9.0 Consensus size: 216
8916 ACTCGTATCA
* *
8926 ATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGA
1 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGG
** * * *
8991 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTGCCTCTCTTGGTTCCTAGA-GAAACTTACG
66 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AACTTTCG
* ** * * *
9055 AAATTGTGGAACTTTTACGAGTTCTTTTATAACTCCGGTTCCTTAAAGTATTCAAGATAATTCAA
130 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGA-TCCA
*
9120 TT-CTTCGAGCAATTTTTCAAAA
194 TTCCTTCGAGCAATTTTTCAAAC
* * * * *
9142 ATTCCATGCTTGGGAAGTCGTATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAAGTTTTGG
1 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGG
* * * * *
9207 CCTTTGAATTAAAAACTTATTTGCATGAGAATTGTTTCTCTATTGGTTGTTGGACGAACTTTCGA
66 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGA
* * * *
9272 ACTTGTCAAACTTTTACGAGTTCTTTTTTAA-TTCCGGTTCCTTAAAGTATTTAAGACGATCCGT
131 ACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-CGGTTCCTTAAAGTATTCAAGATGATCCAT
* * *
9336 TCCTTCGAGTAATTTTCCGAAC
195 TCCTTCGAGCAATTTTTCAAAC
* * * *
9358 ATTCAACGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAAAAAGTTTTGG
1 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGG
* * * * *
9423 ACTTTGAATTAAAAATTTATCTA-GTGAGAATTGTTTCTCTCTTGGTTCTT-GACGAACTTCCAA
66 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGA
* * * * *
9486 AATTGACAAAC-TTTATGAGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGACGATCCATT
131 ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATT
* * * *
9550 TCTTCTAGCAATTTTTTAAAT
196 CCTTCGAGCAATTTTTCAAAC
* * * * * *
9571 ATTCCATTCTCGAGAAGTCACATCATTTGGTCTAAATAGTTTGTCATTTTATAAACAAGTTTTGG
1 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGG
** * * *
9636 TCTTTGAATTAAAAACTTATTTATTTGAGAATTGTTTCTCTCATGGTTTTTGGATGAACTTTCGA
66 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGA
** * * * * *
9701 ACTTGTCAAACTTTGCCAAGTTCTTTTACAACTTTGATTCCTTAAAGTATTCAAGACGATCCATT
131 ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATT
* *
9766 CCTTCGAGCAATTTTCCGAAC
196 CCTTCGAGCAATTTTTCAAAC
* * ** * *
9787 ATTCCACGCTCGAGAAATCGCATCATTCAGTCTAAACAGTTTCTCATTTTGTAAA-AAGTTTTGG
1 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGG
* ** * * * * *
9851 TCTTTCAATTAAAAACTTATTTACGTGAGAATTACTCCTCTATTGGTTCATGGATGAACTTT-AA
66 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGA
* * * ** * *
9915 ATCTTGT-AGAAATTTGATGAGTTCTTTTATAACTTATGTTCCTTAGAGTATTCAAGATGATTCA
131 A-CTTGTCA-AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCA
* *
9979 TTCTTTCGAGCAATTTTTCGAAC
194 TTCCTTCGAGCAATTTTTCAAAC
* * * *
10002 ATTTCATGCTCGAGAAATCGCATCATTTGGTCTAAA-AATTTTGTCATTTTTTAAACAAGTTTTG
1 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTT-TCATTTTGTAAACAAGTTTTG
* * *
10066 GCCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCG
65 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCG
* * * * * *
10131 AACTTGTCAAACTTGTACGAGTTCTTTTATATCTTTGGTTCCTTCAAGTATTCAAGACGAACCAT
130 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCAT
** * * *
10196 TATTTCGAGTAGTTTTTCGAAC
195 TCCTTCGAGCAATTTTTCAAAC
* ** * *
10218 ATTCCATGCTCCGGAAATCGCATCATTCAGTCTAAATAGTTTTCCATTTTGTAATCAAGTTTTGG
1 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGG
* * * * * * * *
10283 TGTTTGTATGAAAAGCTTATTTACTTGAGAATTATTTCTCTCTTTGTTCTTAGACGAACTTTCGA
66 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGA
* * * * * *
10348 ACTTGTCAAAATTTTAC-AGGTTCTTTTTTAACTTCGGTTTCTTAAAGTATTCATGACGGTCCAT
131 ACTTGTCAAACTTTTACGA-GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCAT
** * *
10412 TCCTTTTAGTAGTTTTTCAAAC
195 TCCTTCGAGCAATTTTTCAAAC
* * * *
10434 ATTCCGTGCTCGGGAAATCGTATCATTCGGTATAAATAGTTTTTCATTTTGTAAACAAGTTTTGG
1 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGG
* * * * * *
10499 TCTTTGAATTAAAAACTTATTCACGTGAGAACTATTTCTCTCTTGGTTGTTAGACGAACTTCCGA
66 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGA
* * * *
10564 ACTAGTCAAACTTTTACGAGTTCTTTTTTAAC-TCTGGTTCCTTAAAGTGTTCAATATGATCCAT
131 ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-GGTTCCTTAAAGTATTCAAGATGATCCAT
*
10628 TCCTTCGAGTAAATTTTTCAAAC
195 TCCTTCGAG-CAATTTTTCAAAC
*** * * *
10651 ATTCCATGCGATGAAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAGGTTTTGA
1 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGG
*
10716 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCTA
66 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTC-G
* * *
10780 AAATT-TACAAACTTTTACGAGTTCTTTTTTAACTTCGGTTCATTAAAGTATTCAAGATGATCCA
130 AACTTGT-CAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCA
* * *
10844 TTGCTTCTAGCAGTTTTTCAAAC
194 TTCCTTCGAGCAATTTTTCAAAC
10867 ATTC
1 ATTC
10871 TTGAGACAAA
Statistics
Matches: 1456, Mismatches: 252, Indels: 42
0.83 0.14 0.02
Matches are distributed among these distances:
213 136 0.09
214 53 0.04
215 225 0.15
216 848 0.58
217 192 0.13
218 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.41
Consensus pattern (216 bp):
ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGG
TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGA
ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATT
CCTTCGAGCAATTTTTCAAAC
Found at i:12592 original size:24 final size:24
Alignment explanation
Indices: 12560--12615 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
12550 TATATGGGTA
12560 TCTTCTTGTTTTTCATTTTCATTT
1 TCTTCTTGTTTTTCATTTTCATTT
* *
12584 TCTTCTTGTTTTTCTTTTTCTTTT
1 TCTTCTTGTTTTTCATTTTCATTT
*
12608 TCCTCTTG
1 TCTTCTTG
12616 AGAACTCTCC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.04, C:0.20, G:0.05, T:0.71
Consensus pattern (24 bp):
TCTTCTTGTTTTTCATTTTCATTT
Found at i:12596 original size:12 final size:12
Alignment explanation
Indices: 12560--12615 Score: 51
Period size: 12 Copynumber: 4.7 Consensus size: 12
12550 TATATGGGTA
12560 TCTTCTTGTTTT
1 TCTTCTTGTTTT
**
12572 TCATT-TTCATTT
1 TC-TTCTTGTTTT
12584 TCTTCTTGTTTT
1 TCTTCTTGTTTT
* *
12596 TCTTTTTCTTTT
1 TCTTCTTGTTTT
*
12608 TCCTCTTG
1 TCTTCTTG
12616 AGAACTCTCC
Statistics
Matches: 33, Mismatches: 9, Indels: 4
0.72 0.20 0.09
Matches are distributed among these distances:
11 2 0.06
12 29 0.88
13 2 0.06
ACGTcount: A:0.04, C:0.20, G:0.05, T:0.71
Consensus pattern (12 bp):
TCTTCTTGTTTT
Found at i:15342 original size:18 final size:18
Alignment explanation
Indices: 15319--15377 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
15309 ATCTAAATAA
15319 AACTCTTAATTAAACAAG
1 AACTCTTAATTAAACAAG
* *
15337 AACTC-TAACTTGAATAA-
1 AACTCTTAA-TTAAACAAG
* *
15354 AACTCTTAATTACACTAG
1 AACTCTTAATTAAACAAG
15372 AACTCT
1 AACTCT
15378 AACTAATCTA
Statistics
Matches: 32, Mismatches: 6, Indels: 6
0.73 0.14 0.14
Matches are distributed among these distances:
17 12 0.38
18 20 0.62
ACGTcount: A:0.44, C:0.20, G:0.05, T:0.31
Consensus pattern (18 bp):
AACTCTTAATTAAACAAG
Found at i:15359 original size:17 final size:16
Alignment explanation
Indices: 15312--15379 Score: 55
Period size: 18 Copynumber: 3.9 Consensus size: 16
15302 TAAATATATC
15312 TAAATAAAACTCTTAAT
1 TAAATAAAACTC-TAAT
*
15329 TAAACAAGAACTCTAACT
1 TAAATAA-AACTCTAA-T
*
15347 TGAATAAAACTCTTAAT
1 TAAATAAAACTC-TAAT
* *
15364 TACACTAGAACTCTAA
1 TA-AATAAAACTCTAA
15380 CTAATCTAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
17 19 0.46
18 22 0.54
ACGTcount: A:0.49, C:0.18, G:0.04, T:0.29
Consensus pattern (16 bp):
TAAATAAAACTCTAAT
Found at i:15360 original size:35 final size:35
Alignment explanation
Indices: 15314--15381 Score: 118
Period size: 35 Copynumber: 1.9 Consensus size: 35
15304 AATATATCTA
15314 AATAAAACTCTTAATTAAACAAGAACTCTAACTTG
1 AATAAAACTCTTAATTAAACAAGAACTCTAACTTG
* *
15349 AATAAAACTCTTAATTACACTAGAACTCTAACT
1 AATAAAACTCTTAATTAAACAAGAACTCTAACT
15382 AATCTAAACA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.47, C:0.19, G:0.04, T:0.29
Consensus pattern (35 bp):
AATAAAACTCTTAATTAAACAAGAACTCTAACTTG
Found at i:16543 original size:216 final size:216
Alignment explanation
Indices: 15881--18553 Score: 2881
Period size: 216 Copynumber: 12.4 Consensus size: 216
15871 TTAGAAATTG
* * *
15881 TTTGGTCTAAAAAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTACG
1 TTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
* * *
15946 TGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCAAACTTGCCAAACTTTTACGAGTTCTT
66 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTT
* * *
16011 TTTTAACTCTGGA-TCCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGTAA-TTTTCGAACATT
131 TTATAACT-TTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTTCGAACATT
* * *
16074 CAACGCTCGAGAAATCGCATCA
195 CCATGCTCGGGAAATCGCATCA
*
16096 TTTGGTCTAAATAGTTTTTCATTTTGTAAAAAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
1 TTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
* * *
16161 TGAGAATTGTTTCTCTCTTGGTTCTT-GACGAACTTTCGAAATTGACAAACTTTTACGAGTTCTT
66 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTT
* * * * * * *
16225 TTATAACTTCGGTTCATTAAAGTAATCAAGACGATCCATTTCTTCTAGTAGTTTTTCGAACATTC
131 TTATAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTTCGAACATTC
* *
16290 CATTCTCGGAAAATCGCATCA
196 CATGCTCGGGAAATCGCATCA
* * * **
16311 TTTGGCCTAAATAGTTTGTCATTTTGTTAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTATT
1 TTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
* * * * * * * ** *
16376 TCAGAATTATTTCTCTCTTGGTTTTTGGATGATCTTCCGGACTTGTCAATCTTTGCCAAGTTCTT
66 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTT
* * *
16441 TAATAACTTTGATTCCTTAAAGTATTCAAAACGATCCATTCCTTCGAGCAATTTTTCGAACATTC
131 TTATAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTTCGAACATTC
* *
16506 TATGCTCTGGAAATCGCATCA
196 CATGCTCGGGAAATCGCATCA
* * * * *
16527 TTCGGTTTATATAGTTTCTCATTTTGTAAACAAGTTTTGGTCTTTCAATTAAAAACTTATTTACG
1 TTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
* * * * * * ** * * * *
16592 TGAGAATTATTCCACTATTGCTTC-GGGACGAACTT-TAAATCTAG-AAGAAATTTGACGAGTTC
66 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAA-CTTGTCA-AACTTTTACGAGTTC
* * * * * * *
16654 TTTTTTAAC-TTCAGTTCCTTAGAGTTTTCAAGATGATCCATTCTTTCGAGCAATTTTTCGAACA
129 TTTTATAACTTTGA-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTTCGAACA
*
16718 TTCTATGCTCGGGAAATCGCATCA
193 TTCCATGCTCGGGAAATCGCATCA
* * * *
16742 TTTGGTCTAAA-AATTTTGTCATCTTT-TAAACAAGTTTTGGCCTTTGAATTAATAGCTTATTTA
1 TTTGGTCTAAATAGTTTT-TCAT-TTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTA
* * * * *
16805 CGTGAGAATTGTTTCCCTCTTAGTTCTTGGACAAACTTCTGAAATTGTCAAACTTTTACGAGTTC
64 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTC
* * * * * *
16870 GTTTATATCTTTGGTTCCTTCAAGTATTCAAGACGATCCATTCTTTTGAGCT-ATTTTTCGAACA
129 TTTTATAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG-TAATTTTTCGAACA
* *
16934 TTCCATGCTCGGGAAATCACATGA
193 TTCCATGCTCGGGAAATCGCATCA
* * * * * *
16958 TTCGGTCTTAATAGTTTTTCAATTTGTAATCAAGTTTTGGTGTTTGTATTAAAAACTTATTTACG
1 TTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
* * * * * * *
17023 TGAGAATTATTTTTCTCTTTGTTCTTGGACGAACTTTCAAACTTGTCAGAA-TTTTACAACTTCT
66 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA-AACTTTTACGAGTTCT
* * * * * * * * * ** * * *
17087 TTTTTAGCATCGGTTTCTTAAAGTATTCATGATGGTCCATTCCTTTTAGTAGTTTTTCAAACTTT
130 TTTATAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTTCGAACATT
*
17152 CCATGCTCAGGAAATCGCATCA
195 CCATGCTCGGGAAATCGCATCA
* *
17174 TTCT-GTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAATTTAAAACTTATTTAC
1 TT-TGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTAC
* * * * * *
17238 ATGAGAATTGTTTCTCTCTTTGTTGTTGGACGAAATTTCGAACTAGTCAAACTTTTACGAGTTCT
65 GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCT
* * * * * * * * *
17303 TTTTTAACTCT-AGTTCCTTAAAGTGTCCAATATGATCGATTCCTTCAAGTAATTTTTCAAACAT
130 TTTATAACTTTGA-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTTCGAACAT
** *
17367 TCCATGCGAGGGAAATCACATCA
194 TCCATGCTCGGGAAATCGCATCA
* * *
17390 TTTGGCCTATATAGTTTTTCATTTTGTAAACAAGTTTTGATCTTTGAATTAAAAACTTATTTACG
1 TTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
* ** * *
17455 TGAGAATTGTTTCTCTCTTGGTTCTTGG-CTGGACTTCTAAAATTGACAAACTTTTACGAGTTCT
66 TGAGAATTGTTTCTCTCTTGGTTCTTGGAC-GAACTTCCGAACTTGTCAAACTTTTACGAGTTCT
** * * * * ** * * *
17519 TTTATAACTTCAATTCATTAAAGTATTCAGGATGATCCATTCTTTTTAGTAGTTTTTTGAGCATT
130 TTTATAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTTCGAACATT
* *
17584 CCATTCTCGGGAAATCGTATCA
195 CCATGCTCGGGAAATCGCATCA
* * *
17606 TTTGGTCTAAATAGTTTTTCATTTTGTAAACAATTTTTGATCTTTGAACTAAAAACTTATTTACG
1 TTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
* * *
17671 TGAGAATTGTGTCTCTCTTGGTTCTTGGACAAACTTCCGTAA-TTGTCGAACTTTTACGAGTTCT
66 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCG-AACTTGTCAAACTTTTACGAGTTCT
* * * * * *
17735 TTTATAACTTCGGTTCCTTAAAGTATTAAAGACGATCCAATCCTTAGAGCAATTTTT-GAACATT
130 TTTATAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTTCGAACATT
* * *
17799 TCATGCTCGGGAAGTTGCATCA
195 CCATGCTCGGGAAATCGCATCA
* * * *
17821 TTTGGTCTAAAAAGTTTGTCATTTTGTAAACAAGTTTTGGCCTCTGAATTAAAAACTTATTTACG
1 TTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
* * * * * *
17886 TGAAAATTGTTTCTCTCTTGGTTGTTGGATGAACTTCTGAACTTGTCAAGCTTTTACTAGTTCAT
66 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTC-T
** * * *
17951 TTT-TAACTCCGGTTCC--------TTCAAGAAGATCCATTCCTTCAAGTAA-TTTTCTGAACAT
130 TTTATAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTTC-GAACAT
* * *
18006 TCAATGCTTGAGAAATCGCATCA
194 TCCATGCTCGGGAAATCGCATCA
* * * *
18029 TTTGGTCTACATAGTTTTTCATTTTGTAAAAAAGTTTTGGTTTTTGAATTGAAAACTTATTTACG
1 TTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
* * * *
18094 TGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAAATTGACAAACTTTTACAAGTTCTT
66 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTT
* * * * * *
18159 TTATAACTTTGGTTCATTAAAGTATTCAAGACGATCCATTCCTTCTAGCAGTTTTTTGAACATTC
131 TTATAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTTCGAACATTC
* *
18224 GATTCTCGGGAAATCGCATCA
196 CATGCTCGGGAAATCGCATCA
* * * *
18245 TTTGGTCTAAATAATTTGTCATTTTGTAAACAAGTTTTTGTCTTTCAATTAAAAACTTATTTA-G
1 TTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
* * *
18309 TTGAGAATTGTTTCTCTCTTGGTT-TTAGGATGAACTT-CGAAACTTGTCAAAC-TTTGCCATGT
66 -TGAGAATTGTTTCTCTCTTGGTTCTT-GGACGAACTTCCG-AACTTGTCAAACTTTTACGA-GT
* * * * **
18371 TCTTTTATAAATTTGATTTCTTAAAATATTCAAGATGATCCATTCCTTCGAGTAATTTCCCGAAC
127 TCTTTTATAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTTCGAAC
* *
18436 ATTCCATGCTCAGGAAATTGCATCA
192 ATTCCATGCTCGGGAAATCGCATCA
* * * * *
18461 CTCGGTCTAAATAGTTTCTCATTTTGTAAACAAGTTTT-GTCTTTCTAA-TAAAAACTTTTTTAC
1 TTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTT-GAATTAAAAACTTATTTAC
** * * *
18524 AAGAGAATTGTTCCTCTATTGGTTCATGGA
65 GTGAGAATTGTTTCTCTCTTGGTTCTTGGA
Statistics
Matches: 2042, Mismatches: 370, Indels: 92
0.82 0.15 0.04
Matches are distributed among these distances:
206 4 0.00
207 25 0.01
208 144 0.07
213 2 0.00
214 84 0.04
215 563 0.28
216 1199 0.59
217 21 0.01
ACGTcount: A:0.27, C:0.16, G:0.15, T:0.42
Consensus pattern (216 bp):
TTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTT
TTATAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTTCGAACATTC
CATGCTCGGGAAATCGCATCA
Done.